Hb_091318_010

Information

Type -
Description -
Location Contig91318: 4947-8669
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12910g
description POPTRDRAFT_799954; YODA family protein
nr
ID XP_006368758.1
description hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID U5GVF1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s09520g PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase yoda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62171: 6461-6622 , PASA_asmbl_62173: 7667-7908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091318_010 0.0 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
2 Hb_029253_010 0.0942987623 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
3 Hb_000008_200 0.1039461735 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
4 Hb_004679_040 0.1050623483 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
5 Hb_005357_110 0.1065079109 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
6 Hb_000032_410 0.1069270091 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
7 Hb_000915_130 0.1138284209 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
8 Hb_000922_320 0.1172653975 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
9 Hb_008511_040 0.1189471493 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_000000_480 0.1191352886 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
11 Hb_005245_140 0.1225701349 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
12 Hb_000757_130 0.1280457507 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000110_260 0.1302997444 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
14 Hb_012762_040 0.1304935252 - - big map kinase/bmk, putative [Ricinus communis]
15 Hb_000069_300 0.1320304807 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_001922_110 0.1338633467 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002281_010 0.1348197195 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
18 Hb_000027_170 0.1350646199 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
19 Hb_006925_050 0.1352060177 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
20 Hb_004899_110 0.1359741722 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]

Gene co-expression network

sample Hb_091318_010 Hb_091318_010 Hb_029253_010 Hb_029253_010 Hb_091318_010--Hb_029253_010 Hb_000008_200 Hb_000008_200 Hb_091318_010--Hb_000008_200 Hb_004679_040 Hb_004679_040 Hb_091318_010--Hb_004679_040 Hb_005357_110 Hb_005357_110 Hb_091318_010--Hb_005357_110 Hb_000032_410 Hb_000032_410 Hb_091318_010--Hb_000032_410 Hb_000915_130 Hb_000915_130 Hb_091318_010--Hb_000915_130 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270 Hb_005568_020 Hb_005568_020 Hb_000008_200--Hb_005568_020 Hb_008511_040 Hb_008511_040 Hb_000008_200--Hb_008511_040 Hb_003606_050 Hb_003606_050 Hb_000008_200--Hb_003606_050 Hb_001268_160 Hb_001268_160 Hb_000008_200--Hb_001268_160 Hb_000735_060 Hb_000735_060 Hb_000008_200--Hb_000735_060 Hb_001155_050 Hb_001155_050 Hb_004679_040--Hb_001155_050 Hb_054865_050 Hb_054865_050 Hb_004679_040--Hb_054865_050 Hb_000000_480 Hb_000000_480 Hb_004679_040--Hb_000000_480 Hb_000757_130 Hb_000757_130 Hb_004679_040--Hb_000757_130 Hb_002249_170 Hb_002249_170 Hb_004679_040--Hb_002249_170 Hb_005357_110--Hb_000032_410 Hb_005357_110--Hb_003740_020 Hb_005357_110--Hb_000915_130 Hb_004730_020 Hb_004730_020 Hb_005357_110--Hb_004730_020 Hb_005511_130 Hb_005511_130 Hb_005357_110--Hb_005511_130 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_000032_410--Hb_005511_130 Hb_000032_410--Hb_004730_020 Hb_000915_130--Hb_005511_130 Hb_000042_110 Hb_000042_110 Hb_000915_130--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000915_130--Hb_000260_490 Hb_000915_130--Hb_004730_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.602399 4.40874 9.14613 8.75504 0.432291 0.492615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03692 0.815774 0.650092 1.53943 4.65344

CAGE analysis