Hb_004730_020

Information

Type -
Description -
Location Contig4730: 16136-18580
Sequence    

Annotation

kegg
ID rcu:RCOM_0851160
description clasp, putative
nr
ID XP_012081820.1
description PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
swissprot
ID Q3TYG6
description Protein FAM179A OS=Mus musculus GN=Fam179a PE=2 SV=1
trembl
ID A0A067LLU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09618 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44428: 15148-18552 , PASA_asmbl_44429: 15445-15568
cDNA
(Sanger)
(ID:Location)		 040_M13.ab1: 15148-17157 , 052_H11.ab1: 15148-17155

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004730_020 0.0 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
2 Hb_005511_130 0.0693290521 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
3 Hb_001579_300 0.0882930043 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
4 Hb_000032_410 0.0927439141 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
5 Hb_005357_110 0.0929679511 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
6 Hb_000527_080 0.0994086032 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
7 Hb_003740_020 0.1006233479 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_000984_220 0.1009333026 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
9 Hb_006925_050 0.1020723311 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
10 Hb_029253_010 0.1033834176 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
11 Hb_002488_010 0.1093587085 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
12 Hb_005496_020 0.1114281455 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
13 Hb_000915_130 0.1117492705 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
14 Hb_002498_240 0.1122034323 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
15 Hb_001847_050 0.1149347013 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
16 Hb_164010_050 0.1169579608 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
17 Hb_004545_080 0.1183157266 - - protein with unknown function [Ricinus communis]
18 Hb_006829_070 0.1191996144 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
19 Hb_000076_250 0.119431079 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000689_050 0.1201107431 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004730_020 Hb_004730_020 Hb_005511_130 Hb_005511_130 Hb_004730_020--Hb_005511_130 Hb_001579_300 Hb_001579_300 Hb_004730_020--Hb_001579_300 Hb_000032_410 Hb_000032_410 Hb_004730_020--Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_004730_020--Hb_005357_110 Hb_000527_080 Hb_000527_080 Hb_004730_020--Hb_000527_080 Hb_003740_020 Hb_003740_020 Hb_004730_020--Hb_003740_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_005511_130--Hb_000032_410 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_000915_130 Hb_000915_130 Hb_005511_130--Hb_000915_130 Hb_005511_130--Hb_005357_110 Hb_000152_440 Hb_000152_440 Hb_001579_300--Hb_000152_440 Hb_001579_300--Hb_005511_130 Hb_000388_080 Hb_000388_080 Hb_001579_300--Hb_000388_080 Hb_006925_050 Hb_006925_050 Hb_001579_300--Hb_006925_050 Hb_001579_300--Hb_000527_080 Hb_000032_410--Hb_005357_110 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_029253_010 Hb_029253_010 Hb_000032_410--Hb_029253_010 Hb_005357_110--Hb_029253_010 Hb_005357_110--Hb_003740_020 Hb_005357_110--Hb_000915_130 Hb_000527_080--Hb_004545_080 Hb_001450_040 Hb_001450_040 Hb_000527_080--Hb_001450_040 Hb_000689_050 Hb_000689_050 Hb_000527_080--Hb_000689_050 Hb_003894_030 Hb_003894_030 Hb_000527_080--Hb_003894_030 Hb_000527_080--Hb_003740_020 Hb_003740_020--Hb_029253_010 Hb_021409_070 Hb_021409_070 Hb_003740_020--Hb_021409_070 Hb_003740_020--Hb_005511_130 Hb_003740_020--Hb_000032_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83466 9.37606 36.4383 37.9638 3.43109 7.18571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72181 3.51343 4.38099 6.85619 17.5313

CAGE analysis