Hb_003894_030

Information

Type -
Description -
Location Contig3894: 14214-20452
Sequence    

Annotation

kegg
ID rcu:RCOM_1612150
description plant sec1, putative
nr
ID XP_002511719.1
description plant sec1, putative [Ricinus communis]
swissprot
ID Q9C5P7
description Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3
trembl
ID B9RDD0
description Plant sec1, putative OS=Ricinus communis GN=RCOM_1612150 PE=4 SV=1
Gene Ontology
ID GO:0005623
description protein transport sec1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39018: 11201-20796 , PASA_asmbl_39019: 11227-13808
cDNA
(Sanger)
(ID:Location)		 002_L07.ab1: 11201-14410 , 023_O07.ab1: 11201-13805

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_030 0.0 - - plant sec1, putative [Ricinus communis]
2 Hb_003740_020 0.1081807139 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_013405_070 0.1106210863 - - ferric-chelate reductase, putative [Ricinus communis]
4 Hb_002374_270 0.1111661648 - - conserved hypothetical protein [Ricinus communis]
5 Hb_029253_010 0.1121300971 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
6 Hb_000000_480 0.1191981789 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
7 Hb_000527_080 0.1196292397 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
8 Hb_005511_130 0.119658888 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
9 Hb_000032_410 0.1220938867 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
10 Hb_001377_530 0.1225251853 - - NC domain-containing family protein [Populus trichocarpa]
11 Hb_005357_110 0.1229881391 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
12 Hb_004730_020 0.1236966452 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
13 Hb_003050_360 0.1247857485 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
14 Hb_004218_130 0.1273644262 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
15 Hb_003929_180 0.1275242584 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
16 Hb_001232_090 0.1296053863 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
17 Hb_004545_080 0.1332330973 - - protein with unknown function [Ricinus communis]
18 Hb_003964_080 0.1347324541 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
19 Hb_007101_260 0.1372224523 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
20 Hb_012762_040 0.1378489238 - - big map kinase/bmk, putative [Ricinus communis]

Gene co-expression network

sample Hb_003894_030 Hb_003894_030 Hb_003740_020 Hb_003740_020 Hb_003894_030--Hb_003740_020 Hb_013405_070 Hb_013405_070 Hb_003894_030--Hb_013405_070 Hb_002374_270 Hb_002374_270 Hb_003894_030--Hb_002374_270 Hb_029253_010 Hb_029253_010 Hb_003894_030--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_003894_030--Hb_000000_480 Hb_000527_080 Hb_000527_080 Hb_003894_030--Hb_000527_080 Hb_005357_110 Hb_005357_110 Hb_003740_020--Hb_005357_110 Hb_003740_020--Hb_029253_010 Hb_021409_070 Hb_021409_070 Hb_003740_020--Hb_021409_070 Hb_005511_130 Hb_005511_130 Hb_003740_020--Hb_005511_130 Hb_004730_020 Hb_004730_020 Hb_003740_020--Hb_004730_020 Hb_000032_410 Hb_000032_410 Hb_003740_020--Hb_000032_410 Hb_000800_020 Hb_000800_020 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_000589_170 Hb_000589_170 Hb_013405_070--Hb_000589_170 Hb_002374_270--Hb_029253_010 Hb_002235_060 Hb_002235_060 Hb_002374_270--Hb_002235_060 Hb_000940_210 Hb_000940_210 Hb_002374_270--Hb_000940_210 Hb_003964_080 Hb_003964_080 Hb_002374_270--Hb_003964_080 Hb_002374_270--Hb_005357_110 Hb_029253_010--Hb_005357_110 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_004218_130 Hb_004218_130 Hb_000000_480--Hb_004218_130 Hb_012762_040 Hb_012762_040 Hb_000000_480--Hb_012762_040 Hb_000622_330 Hb_000622_330 Hb_000000_480--Hb_000622_330 Hb_000098_180 Hb_000098_180 Hb_000000_480--Hb_000098_180 Hb_000928_120 Hb_000928_120 Hb_000000_480--Hb_000928_120 Hb_000000_480--Hb_029253_010 Hb_004545_080 Hb_004545_080 Hb_000527_080--Hb_004545_080 Hb_000527_080--Hb_004730_020 Hb_001450_040 Hb_001450_040 Hb_000527_080--Hb_001450_040 Hb_000689_050 Hb_000689_050 Hb_000527_080--Hb_000689_050 Hb_000527_080--Hb_003740_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.760868 1.30685 4.4655 4.49512 0.294252 0.237576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.38051 0.617494 0.850499 1.37041 1.777

CAGE analysis