Hb_012762_040

Information

Type -
Description -
Location Contig12762: 24347-30101
Sequence    

Annotation

kegg
ID rcu:RCOM_0843380
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID XP_002526023.1
description big map kinase/bmk, putative [Ricinus communis]
swissprot
ID Q5Z9J0
description Mitogen-activated protein kinase 12 OS=Oryza sativa subsp. japonica GN=MPK12 PE=1 SV=2
trembl
ID B9SJ54
description Mitogen-activated protein kinase OS=Ricinus communis GN=RCOM_0843380 PE=4 SV=1
Gene Ontology
ID GO:0005634
description map kinase 17 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08449: 24446-30134 , PASA_asmbl_08450: 26742-27272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012762_040 0.0 - - big map kinase/bmk, putative [Ricinus communis]
2 Hb_000979_140 0.0928915058 - - kinase family protein [Populus trichocarpa]
3 Hb_001865_100 0.099098984 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
4 Hb_000000_480 0.1017543303 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
5 Hb_001729_020 0.1063942718 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
6 Hb_000197_180 0.1083499926 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
7 Hb_000098_180 0.1097481074 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
8 Hb_002391_320 0.1100251917 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
9 Hb_002281_010 0.1141710428 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
10 Hb_000922_320 0.1159753887 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
11 Hb_005357_110 0.116240929 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
12 Hb_054865_050 0.1171716773 - - calcium-dependent protein kinase, putative [Ricinus communis]
13 Hb_004943_040 0.1176302913 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
14 Hb_011671_340 0.1185418731 - - small GTPase [Hevea brasiliensis]
15 Hb_003687_130 0.1190677815 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
16 Hb_000589_170 0.1193331121 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
17 Hb_000375_060 0.1202315784 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
18 Hb_001155_050 0.1202443481 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
19 Hb_000452_030 0.120821181 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
20 Hb_029253_010 0.1210256019 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]

Gene co-expression network

sample Hb_012762_040 Hb_012762_040 Hb_000979_140 Hb_000979_140 Hb_012762_040--Hb_000979_140 Hb_001865_100 Hb_001865_100 Hb_012762_040--Hb_001865_100 Hb_000000_480 Hb_000000_480 Hb_012762_040--Hb_000000_480 Hb_001729_020 Hb_001729_020 Hb_012762_040--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_012762_040--Hb_000197_180 Hb_000098_180 Hb_000098_180 Hb_012762_040--Hb_000098_180 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_004943_040 Hb_004943_040 Hb_001865_100--Hb_004943_040 Hb_001865_100--Hb_004052_110 Hb_003687_130 Hb_003687_130 Hb_001865_100--Hb_003687_130 Hb_000665_200 Hb_000665_200 Hb_001865_100--Hb_000665_200 Hb_000510_190 Hb_000510_190 Hb_001865_100--Hb_000510_190 Hb_002259_220 Hb_002259_220 Hb_001865_100--Hb_002259_220 Hb_004218_130 Hb_004218_130 Hb_000000_480--Hb_004218_130 Hb_000622_330 Hb_000622_330 Hb_000000_480--Hb_000622_330 Hb_000000_480--Hb_000098_180 Hb_000928_120 Hb_000928_120 Hb_000000_480--Hb_000928_120 Hb_029253_010 Hb_029253_010 Hb_000000_480--Hb_029253_010 Hb_002686_150 Hb_002686_150 Hb_001729_020--Hb_002686_150 Hb_000711_010 Hb_000711_010 Hb_001729_020--Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_001729_020--Hb_002349_030 Hb_003428_090 Hb_003428_090 Hb_001729_020--Hb_003428_090 Hb_002965_050 Hb_002965_050 Hb_001729_020--Hb_002965_050 Hb_000853_330 Hb_000853_330 Hb_000197_180--Hb_000853_330 Hb_002739_120 Hb_002739_120 Hb_000197_180--Hb_002739_120 Hb_004375_110 Hb_004375_110 Hb_000197_180--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_000197_180--Hb_060094_010 Hb_000197_180--Hb_002349_030 Hb_000098_180--Hb_004218_130 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.45521 37.2006 57.4648 54.0541 4.1606 5.93535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27637 12.6051 14.6634 17.2336 38.8556

CAGE analysis