Hb_011188_010

Information

Type -
Description -
Location Contig11188: 7244-12505
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13620g
description hypothetical protein
nr
ID XP_012082246.1
description PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
swissprot
ID P96554
description Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1
trembl
ID A0A067K9S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16439 PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein LOC105642145 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03586: 7251-12496 , PASA_asmbl_03587: 7251-12438 , PASA_asmbl_03588: 9859-12496 , PASA_asmbl_03589: 9814-10945 , PASA_asmbl_03591: 9634-9778 , PASA_asmbl_03592: 9498-9627
cDNA
(Sanger)
(ID:Location)		 052_O09.ab1: 7251-9236

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011188_010 0.0 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
2 Hb_009078_020 0.0549801953 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
3 Hb_001059_060 0.0736122871 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
4 Hb_000300_560 0.0761773374 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
5 Hb_000477_070 0.0764617984 - - histone h2a, putative [Ricinus communis]
6 Hb_000594_060 0.0768261307 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
7 Hb_004577_010 0.0786749507 - - PREDICTED: transmembrane protein 45A [Prunus mume]
8 Hb_002259_220 0.0833290091 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
9 Hb_013968_010 0.0873946786 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
10 Hb_001998_210 0.0885536403 - - unnamed protein product [Coffea canephora]
11 Hb_004052_110 0.0885568857 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
12 Hb_029552_020 0.0886311296 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002849_050 0.0896587344 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
14 Hb_001663_130 0.0903408302 - - acyl-CoA thioesterase, putative [Ricinus communis]
15 Hb_002809_160 0.093328974 - - PREDICTED: protein FAM63A [Jatropha curcas]
16 Hb_000260_160 0.0962367424 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
17 Hb_001001_090 0.0971101093 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
18 Hb_002010_090 0.0971982278 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_000487_370 0.0982631417 - - -
20 Hb_000172_360 0.099217065 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]

Gene co-expression network

sample Hb_011188_010 Hb_011188_010 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_009078_020--Hb_001059_060 Hb_001998_210 Hb_001998_210 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_004052_110 Hb_004052_110 Hb_001059_060--Hb_004052_110 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_001396_020 Hb_001396_020 Hb_000300_560--Hb_001396_020 Hb_000482_050 Hb_000482_050 Hb_000300_560--Hb_000482_050 Hb_000300_560--Hb_004577_010 Hb_021596_020 Hb_021596_020 Hb_000300_560--Hb_021596_020 Hb_001279_020 Hb_001279_020 Hb_000300_560--Hb_001279_020 Hb_002259_220 Hb_002259_220 Hb_000477_070--Hb_002259_220 Hb_027043_010 Hb_027043_010 Hb_000477_070--Hb_027043_010 Hb_002686_410 Hb_002686_410 Hb_000477_070--Hb_002686_410 Hb_007290_070 Hb_007290_070 Hb_000477_070--Hb_007290_070 Hb_000477_070--Hb_002809_160 Hb_000487_370 Hb_000487_370 Hb_000594_060--Hb_000487_370 Hb_002432_050 Hb_002432_050 Hb_000594_060--Hb_002432_050 Hb_001663_130 Hb_001663_130 Hb_000594_060--Hb_001663_130 Hb_003175_070 Hb_003175_070 Hb_000594_060--Hb_003175_070 Hb_000414_080 Hb_000414_080 Hb_000594_060--Hb_000414_080 Hb_004162_220 Hb_004162_220 Hb_004577_010--Hb_004162_220 Hb_004577_010--Hb_001663_130 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60411 13.0993 20.5495 13.5469 3.8048 4.26554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53378 2.70536 1.91939 10.9932 16.8015

CAGE analysis