Hb_002432_050

Information

Type -
Description -
Location Contig2432: 62622-69226
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02950g
description hypothetical protein
nr
ID XP_012090336.1
description PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9C3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01561 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25425: 67212-69066 , PASA_asmbl_25426: 64959-67550 , PASA_asmbl_25427: 65797-67073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002432_050 0.0 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
2 Hb_005527_060 0.0877523598 - - malic enzyme, putative [Ricinus communis]
3 Hb_000594_060 0.0899739483 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
4 Hb_001663_130 0.103668427 - - acyl-CoA thioesterase, putative [Ricinus communis]
5 Hb_013968_010 0.1078083568 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
6 Hb_011188_010 0.1078532484 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
7 Hb_001117_080 0.11134419 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
8 Hb_000098_180 0.1132500071 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
9 Hb_003894_060 0.1136837134 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005214_070 0.1158643408 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
11 Hb_000589_170 0.1164539033 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
12 Hb_001001_090 0.1172023016 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
13 Hb_000230_530 0.1193293718 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002259_220 0.1197640729 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
15 Hb_002942_140 0.1206323595 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
16 Hb_004545_080 0.1224032001 - - protein with unknown function [Ricinus communis]
17 Hb_000477_070 0.1229988898 - - histone h2a, putative [Ricinus communis]
18 Hb_003055_070 0.1260940771 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
19 Hb_004577_010 0.1261145967 - - PREDICTED: transmembrane protein 45A [Prunus mume]
20 Hb_000649_330 0.1263776545 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]

Gene co-expression network

sample Hb_002432_050 Hb_002432_050 Hb_005527_060 Hb_005527_060 Hb_002432_050--Hb_005527_060 Hb_000594_060 Hb_000594_060 Hb_002432_050--Hb_000594_060 Hb_001663_130 Hb_001663_130 Hb_002432_050--Hb_001663_130 Hb_013968_010 Hb_013968_010 Hb_002432_050--Hb_013968_010 Hb_011188_010 Hb_011188_010 Hb_002432_050--Hb_011188_010 Hb_001117_080 Hb_001117_080 Hb_002432_050--Hb_001117_080 Hb_000310_060 Hb_000310_060 Hb_005527_060--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_005527_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_005527_060--Hb_001587_040 Hb_000589_170 Hb_000589_170 Hb_005527_060--Hb_000589_170 Hb_000011_560 Hb_000011_560 Hb_005527_060--Hb_000011_560 Hb_000594_060--Hb_011188_010 Hb_000487_370 Hb_000487_370 Hb_000594_060--Hb_000487_370 Hb_000594_060--Hb_001663_130 Hb_003175_070 Hb_003175_070 Hb_000594_060--Hb_003175_070 Hb_000414_080 Hb_000414_080 Hb_000594_060--Hb_000414_080 Hb_000300_560 Hb_000300_560 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_001663_130--Hb_011188_010 Hb_001821_060 Hb_001821_060 Hb_013968_010--Hb_001821_060 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_003226_090 Hb_003226_090 Hb_013968_010--Hb_003226_090 Hb_001514_240 Hb_001514_240 Hb_013968_010--Hb_001514_240 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_000098_180 Hb_000098_180 Hb_001117_080--Hb_000098_180 Hb_086639_050 Hb_086639_050 Hb_001117_080--Hb_086639_050 Hb_000649_330 Hb_000649_330 Hb_001117_080--Hb_000649_330 Hb_000567_090 Hb_000567_090 Hb_001117_080--Hb_000567_090 Hb_002249_170 Hb_002249_170 Hb_001117_080--Hb_002249_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.539525 2.15647 5.73438 2.44462 0.307248 0.65247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.453807 0.428433 0.358123 2.05139 3.29018

CAGE analysis