Hb_004346_040

Information

Type -
Description -
Location Contig4346: 47384-52764
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06630g
description POPTRDRAFT_904781; hypothetical protein
nr
ID XP_002323362.1
description hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
swissprot
ID Q2VEX9
description Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO PE=2 SV=1
trembl
ID B9IIH0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06630g PE=4 SV=1
Gene Ontology
ID GO:0046608
description carotenoid isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42429: 47397-52674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004346_040 0.0 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
2 Hb_000093_140 0.0802061267 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
3 Hb_000906_070 0.0947410544 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
4 Hb_005015_020 0.0978094052 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
5 Hb_013968_010 0.1001400881 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
6 Hb_004324_120 0.1009860355 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
7 Hb_002447_050 0.1043307602 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_012539_040 0.1044404405 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
9 Hb_000933_110 0.1051483436 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
10 Hb_000446_040 0.1078369805 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
11 Hb_005288_180 0.1093486954 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_022425_050 0.1097233001 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
13 Hb_004223_270 0.1117694263 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
14 Hb_000005_100 0.1142773106 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
15 Hb_001499_070 0.1161437077 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
16 Hb_003055_070 0.1187905822 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
17 Hb_004837_210 0.1207778773 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
18 Hb_000042_050 0.1234095278 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
19 Hb_001865_010 0.1236596427 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
20 Hb_000665_070 0.1238743502 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004346_040 Hb_004346_040 Hb_000093_140 Hb_000093_140 Hb_004346_040--Hb_000093_140 Hb_000906_070 Hb_000906_070 Hb_004346_040--Hb_000906_070 Hb_005015_020 Hb_005015_020 Hb_004346_040--Hb_005015_020 Hb_013968_010 Hb_013968_010 Hb_004346_040--Hb_013968_010 Hb_004324_120 Hb_004324_120 Hb_004346_040--Hb_004324_120 Hb_002447_050 Hb_002447_050 Hb_004346_040--Hb_002447_050 Hb_003894_060 Hb_003894_060 Hb_000093_140--Hb_003894_060 Hb_003055_070 Hb_003055_070 Hb_000093_140--Hb_003055_070 Hb_007765_130 Hb_007765_130 Hb_000093_140--Hb_007765_130 Hb_005214_070 Hb_005214_070 Hb_000093_140--Hb_005214_070 Hb_000093_140--Hb_004324_120 Hb_001109_160 Hb_001109_160 Hb_000906_070--Hb_001109_160 Hb_006916_030 Hb_006916_030 Hb_000906_070--Hb_006916_030 Hb_000359_220 Hb_000359_220 Hb_000906_070--Hb_000359_220 Hb_029552_020 Hb_029552_020 Hb_000906_070--Hb_029552_020 Hb_013399_090 Hb_013399_090 Hb_000906_070--Hb_013399_090 Hb_005015_020--Hb_004324_120 Hb_005288_180 Hb_005288_180 Hb_005015_020--Hb_005288_180 Hb_012539_040 Hb_012539_040 Hb_005015_020--Hb_012539_040 Hb_000446_040 Hb_000446_040 Hb_005015_020--Hb_000446_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130 Hb_001821_060 Hb_001821_060 Hb_013968_010--Hb_001821_060 Hb_011188_010 Hb_011188_010 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_003226_090 Hb_003226_090 Hb_013968_010--Hb_003226_090 Hb_001514_240 Hb_001514_240 Hb_013968_010--Hb_001514_240 Hb_004324_120--Hb_012539_040 Hb_004324_120--Hb_005288_180 Hb_137600_010 Hb_137600_010 Hb_004324_120--Hb_137600_010 Hb_004324_120--Hb_000446_040 Hb_000453_230 Hb_000453_230 Hb_002447_050--Hb_000453_230 Hb_001663_130 Hb_001663_130 Hb_002447_050--Hb_001663_130 Hb_002447_050--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_002447_050--Hb_000529_130 Hb_000331_340 Hb_000331_340 Hb_002447_050--Hb_000331_340 Hb_000300_560 Hb_000300_560 Hb_002447_050--Hb_000300_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27906 9.86002 15.9158 6.46242 2.22833 2.42788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01388 1.10365 1.39536 4.86697 18.926

CAGE analysis