Hb_000446_040

Information

Type -
Description -
Location Contig446: 76848-82479
Sequence    

Annotation

kegg
ID rcu:RCOM_0253230
description ATP binding protein, putative
nr
ID XP_012080980.1
description PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
swissprot
ID P51281
description Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3 SV=1
trembl
ID A0A067KF53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16168 PE=4 SV=1
Gene Ontology
ID GO:0009507
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43009: 76895-82491 , PASA_asmbl_43010: 77930-78090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000446_040 0.0 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
2 Hb_003055_070 0.0970615712 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
3 Hb_000933_110 0.0981889976 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
4 Hb_005015_020 0.1052613039 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
5 Hb_000334_050 0.1071786737 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
6 Hb_004346_040 0.1078369805 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
7 Hb_004324_120 0.1143002152 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
8 Hb_005074_050 0.1195108418 - - PREDICTED: myosin-6-like [Jatropha curcas]
9 Hb_004223_270 0.1195165344 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
10 Hb_000093_140 0.1225154756 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
11 Hb_000392_240 0.1326649538 - - DNA binding protein, putative [Ricinus communis]
12 Hb_001386_020 0.1360259377 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000005_100 0.1401129767 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
14 Hb_022425_050 0.1410183304 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
15 Hb_148146_010 0.1411082172 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
16 Hb_012539_040 0.1413280981 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
17 Hb_003664_030 0.1417651524 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
18 Hb_002432_050 0.142392429 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
19 Hb_000327_200 0.1424019136 - - glutathione-s-transferase omega, putative [Ricinus communis]
20 Hb_000940_030 0.1441352257 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000446_040 Hb_000446_040 Hb_003055_070 Hb_003055_070 Hb_000446_040--Hb_003055_070 Hb_000933_110 Hb_000933_110 Hb_000446_040--Hb_000933_110 Hb_005015_020 Hb_005015_020 Hb_000446_040--Hb_005015_020 Hb_000334_050 Hb_000334_050 Hb_000446_040--Hb_000334_050 Hb_004346_040 Hb_004346_040 Hb_000446_040--Hb_004346_040 Hb_004324_120 Hb_004324_120 Hb_000446_040--Hb_004324_120 Hb_000940_030 Hb_000940_030 Hb_003055_070--Hb_000940_030 Hb_007765_130 Hb_007765_130 Hb_003055_070--Hb_007765_130 Hb_000005_100 Hb_000005_100 Hb_003055_070--Hb_000005_100 Hb_000093_140 Hb_000093_140 Hb_003055_070--Hb_000093_140 Hb_004223_270 Hb_004223_270 Hb_003055_070--Hb_004223_270 Hb_000933_110--Hb_004223_270 Hb_000933_110--Hb_000334_050 Hb_000260_160 Hb_000260_160 Hb_000933_110--Hb_000260_160 Hb_000933_110--Hb_004346_040 Hb_027445_100 Hb_027445_100 Hb_000933_110--Hb_027445_100 Hb_005015_020--Hb_004324_120 Hb_005015_020--Hb_004346_040 Hb_005288_180 Hb_005288_180 Hb_005015_020--Hb_005288_180 Hb_012539_040 Hb_012539_040 Hb_005015_020--Hb_012539_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130 Hb_000334_050--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000334_050--Hb_022425_050 Hb_000334_050--Hb_027445_100 Hb_005731_100 Hb_005731_100 Hb_000334_050--Hb_005731_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200 Hb_004346_040--Hb_000093_140 Hb_000906_070 Hb_000906_070 Hb_004346_040--Hb_000906_070 Hb_013968_010 Hb_013968_010 Hb_004346_040--Hb_013968_010 Hb_004346_040--Hb_004324_120 Hb_002447_050 Hb_002447_050 Hb_004346_040--Hb_002447_050 Hb_004324_120--Hb_012539_040 Hb_004324_120--Hb_005288_180 Hb_137600_010 Hb_137600_010 Hb_004324_120--Hb_137600_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46134 12.8438 25.5875 8.04788 1.58446 1.90629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70208 2.02297 2.36695 4.02781 20.7277

CAGE analysis