Hb_000940_030

Information

Type -
Description -
Location Contig940: 25906-31245
Sequence    

Annotation

kegg
ID rcu:RCOM_0660930
description triosephosphate isomerase, putative (EC:5.3.1.1)
nr
ID XP_012084383.1
description PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
swissprot
ID P48496
description Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1
trembl
ID A0A067JUE4
description Triosephosphate isomerase OS=Jatropha curcas GN=JCGZ_19591 PE=3 SV=1
Gene Ontology
ID GO:0005739
description triosephosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63133: 25941-31244
cDNA
(Sanger)
(ID:Location)		 037_I05.ab1: 27079-31244

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_030 0.0 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
2 Hb_010868_040 0.0883914601 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
3 Hb_000310_060 0.0898063984 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
4 Hb_000270_280 0.0920145899 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
5 Hb_003055_070 0.0944315115 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
6 Hb_000996_080 0.0944439972 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
7 Hb_001365_030 0.100856938 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
8 Hb_003020_250 0.1025732687 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
9 Hb_001227_140 0.1058762374 - - PREDICTED: protein ROS1 [Jatropha curcas]
10 Hb_003915_020 0.1059400735 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
11 Hb_010632_020 0.1076851013 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
12 Hb_000327_200 0.11457581 - - glutathione-s-transferase omega, putative [Ricinus communis]
13 Hb_002701_070 0.1169253613 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
14 Hb_000227_400 0.1181932045 - - lipoxygenase, putative [Ricinus communis]
15 Hb_005527_060 0.1220058865 - - malic enzyme, putative [Ricinus communis]
16 Hb_000684_200 0.1232659914 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
17 Hb_000011_560 0.1237326587 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
18 Hb_005784_030 0.1239938019 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
19 Hb_004223_270 0.1252759896 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
20 Hb_004648_030 0.1269657162 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]

Gene co-expression network

sample Hb_000940_030 Hb_000940_030 Hb_010868_040 Hb_010868_040 Hb_000940_030--Hb_010868_040 Hb_000310_060 Hb_000310_060 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_003055_070 Hb_003055_070 Hb_000940_030--Hb_003055_070 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_001365_030 Hb_001365_030 Hb_000940_030--Hb_001365_030 Hb_004855_020 Hb_004855_020 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_000207_350 Hb_000207_350 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040 Hb_000310_060--Hb_000270_280 Hb_003398_040 Hb_003398_040 Hb_000310_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_000310_060--Hb_001587_040 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_005527_060 Hb_005527_060 Hb_000310_060--Hb_005527_060 Hb_003680_090 Hb_003680_090 Hb_000270_280--Hb_003680_090 Hb_004648_030 Hb_004648_030 Hb_000270_280--Hb_004648_030 Hb_004162_270 Hb_004162_270 Hb_000270_280--Hb_004162_270 Hb_005784_030 Hb_005784_030 Hb_000270_280--Hb_005784_030 Hb_007765_130 Hb_007765_130 Hb_003055_070--Hb_007765_130 Hb_000446_040 Hb_000446_040 Hb_003055_070--Hb_000446_040 Hb_000005_100 Hb_000005_100 Hb_003055_070--Hb_000005_100 Hb_000093_140 Hb_000093_140 Hb_003055_070--Hb_000093_140 Hb_004223_270 Hb_004223_270 Hb_003055_070--Hb_004223_270 Hb_003020_250 Hb_003020_250 Hb_000996_080--Hb_003020_250 Hb_000996_080--Hb_000327_200 Hb_000996_080--Hb_000310_060 Hb_000689_050 Hb_000689_050 Hb_000996_080--Hb_000689_050 Hb_000996_080--Hb_001587_040 Hb_010632_020 Hb_010632_020 Hb_001365_030--Hb_010632_020 Hb_001365_030--Hb_007765_130 Hb_000679_080 Hb_000679_080 Hb_001365_030--Hb_000679_080 Hb_002044_160 Hb_002044_160 Hb_001365_030--Hb_002044_160 Hb_003053_070 Hb_003053_070 Hb_001365_030--Hb_003053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.87693 29.9296 131.181 54.3864 6.25005 3.27453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.69707 11.1318 4.48957 28.7643 102.583

CAGE analysis