Hb_010381_040

Information

Type -
Description -
Location Contig10381: 17327-24965
Sequence    

Annotation

kegg
ID rcu:RCOM_0312450
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_002527409.1
description beta-galactosidase, putative [Ricinus communis]
swissprot
ID Q9SCW1
description Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1
trembl
ID B9SN40
description Beta-galactosidase OS=Ricinus communis GN=RCOM_0312450 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01419: 17329-24860 , PASA_asmbl_01420: 19259-19560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_040 0.0 - - beta-galactosidase, putative [Ricinus communis]
2 Hb_000207_350 0.0916611777 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
3 Hb_004855_020 0.0958271447 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
4 Hb_010868_040 0.098199687 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
5 Hb_000243_060 0.1079018313 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
6 Hb_001123_310 0.1098511085 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
7 Hb_002701_070 0.1116749971 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
8 Hb_000465_410 0.1132506548 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004994_330 0.1172134914 - - DNA binding protein, putative [Ricinus communis]
10 Hb_000926_040 0.1178331645 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
11 Hb_000008_200 0.1182919369 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
12 Hb_000689_050 0.1210471596 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011174_040 0.1211939473 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001268_160 0.1212332493 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
15 Hb_001377_530 0.1217410113 - - NC domain-containing family protein [Populus trichocarpa]
16 Hb_001180_010 0.1223533396 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
17 Hb_003398_040 0.1237909841 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
18 Hb_005568_020 0.1257263925 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
19 Hb_006133_020 0.1258909578 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
20 Hb_000227_400 0.1266734823 - - lipoxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010381_040 Hb_010381_040 Hb_000207_350 Hb_000207_350 Hb_010381_040--Hb_000207_350 Hb_004855_020 Hb_004855_020 Hb_010381_040--Hb_004855_020 Hb_010868_040 Hb_010868_040 Hb_010381_040--Hb_010868_040 Hb_000243_060 Hb_000243_060 Hb_010381_040--Hb_000243_060 Hb_001123_310 Hb_001123_310 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_000207_350--Hb_004855_020 Hb_001104_150 Hb_001104_150 Hb_000207_350--Hb_001104_150 Hb_000207_350--Hb_001123_310 Hb_000207_350--Hb_010868_040 Hb_005568_020 Hb_005568_020 Hb_000207_350--Hb_005568_020 Hb_004855_020--Hb_010868_040 Hb_000227_400 Hb_000227_400 Hb_004855_020--Hb_000227_400 Hb_004855_020--Hb_001104_150 Hb_004855_020--Hb_001123_310 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_010868_040--Hb_000243_060 Hb_000181_330 Hb_000181_330 Hb_000243_060--Hb_000181_330 Hb_002078_390 Hb_002078_390 Hb_000243_060--Hb_002078_390 Hb_000243_060--Hb_000227_400 Hb_000926_040 Hb_000926_040 Hb_000243_060--Hb_000926_040 Hb_000120_300 Hb_000120_300 Hb_001123_310--Hb_000120_300 Hb_000483_080 Hb_000483_080 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020 Hb_000465_410 Hb_000465_410 Hb_002701_070--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_002701_070--Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_002701_070--Hb_001180_010 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_002701_070--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.804123 4.83379 31.5114 23.6812 0.375388 1.68203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82417 2.64319 1.03278 6.1257 17.3032

CAGE analysis