Hb_000120_300

Information

Type -
Description -
Location Contig120: 215303-227046
Sequence    

Annotation

kegg
ID egr:104419543
description kinesin-like calmodulin-binding protein
nr
ID XP_010029536.1
description PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
swissprot
ID Q9FHN8
description Kinesin-like calmodulin-binding protein OS=Arabidopsis thaliana GN=KCBP PE=1 SV=1
trembl
ID A0A059ART5
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02176 PE=4 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like calmodulin-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06102: 215380-216005 , PASA_asmbl_06103: 215328-215578 , PASA_asmbl_06104: 217131-221128 , PASA_asmbl_06105: 221303-225047 , PASA_asmbl_06106: 225787-227037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_300 0.0 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
2 Hb_001123_310 0.0755884114 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
3 Hb_000483_080 0.0984040678 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
4 Hb_021346_050 0.1070211891 - - xylulose kinase, putative [Ricinus communis]
5 Hb_000207_350 0.1153948257 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
6 Hb_000088_240 0.1155666858 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_010868_040 0.1202898967 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
8 Hb_004855_020 0.1230290696 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
9 Hb_002871_130 0.1233027836 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
10 Hb_007943_180 0.1242277146 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
11 Hb_005144_060 0.1328274312 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
12 Hb_003398_040 0.1335884133 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
13 Hb_002942_140 0.1348644217 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
14 Hb_000416_190 0.137518625 - - -
15 Hb_002942_120 0.1379927095 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
16 Hb_004531_080 0.1392904016 - - hypothetical protein RCOM_1491960 [Ricinus communis]
17 Hb_000792_050 0.1401486277 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000200_330 0.1405519348 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
19 Hb_010381_040 0.1428208486 - - beta-galactosidase, putative [Ricinus communis]
20 Hb_000227_400 0.1429547431 - - lipoxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_300 Hb_000120_300 Hb_001123_310 Hb_001123_310 Hb_000120_300--Hb_001123_310 Hb_000483_080 Hb_000483_080 Hb_000120_300--Hb_000483_080 Hb_021346_050 Hb_021346_050 Hb_000120_300--Hb_021346_050 Hb_000207_350 Hb_000207_350 Hb_000120_300--Hb_000207_350 Hb_000088_240 Hb_000088_240 Hb_000120_300--Hb_000088_240 Hb_010868_040 Hb_010868_040 Hb_000120_300--Hb_010868_040 Hb_001123_310--Hb_000207_350 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020 Hb_000077_110 Hb_000077_110 Hb_000483_080--Hb_000077_110 Hb_004531_080 Hb_004531_080 Hb_000483_080--Hb_004531_080 Hb_002871_130 Hb_002871_130 Hb_000483_080--Hb_002871_130 Hb_002284_260 Hb_002284_260 Hb_000483_080--Hb_002284_260 Hb_000032_610 Hb_000032_610 Hb_021346_050--Hb_000032_610 Hb_007943_180 Hb_007943_180 Hb_021346_050--Hb_007943_180 Hb_021346_050--Hb_010868_040 Hb_002942_120 Hb_002942_120 Hb_021346_050--Hb_002942_120 Hb_004102_080 Hb_004102_080 Hb_021346_050--Hb_004102_080 Hb_004855_020 Hb_004855_020 Hb_000207_350--Hb_004855_020 Hb_001104_150 Hb_001104_150 Hb_000207_350--Hb_001104_150 Hb_000207_350--Hb_010868_040 Hb_000207_350--Hb_010381_040 Hb_005568_020 Hb_005568_020 Hb_000207_350--Hb_005568_020 Hb_000935_080 Hb_000935_080 Hb_000088_240--Hb_000935_080 Hb_000088_240--Hb_001123_310 Hb_001377_530 Hb_001377_530 Hb_000088_240--Hb_001377_530 Hb_001117_080 Hb_001117_080 Hb_000088_240--Hb_001117_080 Hb_005527_060 Hb_005527_060 Hb_000088_240--Hb_005527_060 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010868_040--Hb_010381_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.770535 2.20649 17.5295 8.64738 0.65294 0.829283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.851207 0.421774 0.524337 5.45314 6.48889

CAGE analysis