Hb_001377_530

Information

Type -
Description -
Location Contig1377: 467205-470358
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09680g
description POPTRDRAFT_834794; NC domain-containing family protein
nr
ID XP_002320878.1
description NC domain-containing family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I904
description NC domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s09680g PE=4 SV=1
Gene Ontology
ID GO:0016746
description nc domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10459: 467142-470085 , PASA_asmbl_10460: 468407-468657 , PASA_asmbl_10462: 469369-469605
cDNA
(Sanger)
(ID:Location)		 037_J19.ab1: 467456-470085

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_530 0.0 - - NC domain-containing family protein [Populus trichocarpa]
2 Hb_003050_360 0.1036154082 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
3 Hb_002641_120 0.1090027 - - PREDICTED: calmodulin [Jatropha curcas]
4 Hb_003398_040 0.1143574651 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
5 Hb_001123_310 0.1203565518 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
6 Hb_003299_020 0.1213230321 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
7 Hb_001408_170 0.1216489562 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
8 Hb_010381_040 0.1217410113 - - beta-galactosidase, putative [Ricinus communis]
9 Hb_003894_030 0.1225251853 - - plant sec1, putative [Ricinus communis]
10 Hb_000689_050 0.1244652429 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000230_190 0.1249214687 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
12 Hb_004855_020 0.1275081181 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
13 Hb_000753_110 0.1275698709 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
14 Hb_000088_240 0.1276185246 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_002701_070 0.1286782933 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
16 Hb_011174_040 0.130752958 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000310_060 0.1321200345 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
18 Hb_013405_070 0.1354750054 - - ferric-chelate reductase, putative [Ricinus communis]
19 Hb_004195_140 0.135843202 - - Sec14 cytosolic factor, putative [Ricinus communis]
20 Hb_000207_350 0.1364319038 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_530 Hb_001377_530 Hb_003050_360 Hb_003050_360 Hb_001377_530--Hb_003050_360 Hb_002641_120 Hb_002641_120 Hb_001377_530--Hb_002641_120 Hb_003398_040 Hb_003398_040 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310 Hb_003299_020 Hb_003299_020 Hb_001377_530--Hb_003299_020 Hb_001408_170 Hb_001408_170 Hb_001377_530--Hb_001408_170 Hb_000689_050 Hb_000689_050 Hb_003050_360--Hb_000689_050 Hb_007101_260 Hb_007101_260 Hb_003050_360--Hb_007101_260 Hb_112064_010 Hb_112064_010 Hb_003050_360--Hb_112064_010 Hb_004545_080 Hb_004545_080 Hb_003050_360--Hb_004545_080 Hb_011174_040 Hb_011174_040 Hb_003050_360--Hb_011174_040 Hb_000753_110 Hb_000753_110 Hb_002641_120--Hb_000753_110 Hb_000310_060 Hb_000310_060 Hb_002641_120--Hb_000310_060 Hb_002641_120--Hb_003398_040 Hb_002701_070 Hb_002701_070 Hb_002641_120--Hb_002701_070 Hb_001433_150 Hb_001433_150 Hb_002641_120--Hb_001433_150 Hb_003398_040--Hb_000310_060 Hb_000009_420 Hb_000009_420 Hb_003398_040--Hb_000009_420 Hb_001587_040 Hb_001587_040 Hb_003398_040--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_003398_040--Hb_005527_060 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_003398_040--Hb_000753_110 Hb_000120_300 Hb_000120_300 Hb_001123_310--Hb_000120_300 Hb_000207_350 Hb_000207_350 Hb_001123_310--Hb_000207_350 Hb_000483_080 Hb_000483_080 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020 Hb_005545_020 Hb_005545_020 Hb_003299_020--Hb_005545_020 Hb_003299_020--Hb_000753_110 Hb_010672_050 Hb_010672_050 Hb_003299_020--Hb_010672_050 Hb_003299_020--Hb_000009_420 Hb_003299_020--Hb_003398_040 Hb_004052_100 Hb_004052_100 Hb_001408_170--Hb_004052_100 Hb_001268_160 Hb_001268_160 Hb_001408_170--Hb_001268_160 Hb_001401_040 Hb_001401_040 Hb_001408_170--Hb_001401_040 Hb_001408_170--Hb_010381_040 Hb_001408_170--Hb_011174_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70748 5.1522 27.2331 19.1774 0.469656 0.663487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38033 2.18773 3.49807 6.85508 11.6029

CAGE analysis