Hb_000009_420

Information

Type -
Description -
Location Contig9: 439892-445319
Sequence    

Annotation

kegg
ID rcu:RCOM_0604220
description electron transporter, putative
nr
ID XP_012079116.1
description PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6U7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12288 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61893: 439774-439966 , PASA_asmbl_61894: 440269-445090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_420 0.0 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
2 Hb_003398_040 0.0926236784 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
3 Hb_000753_110 0.1088366585 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
4 Hb_000416_190 0.1169698844 - - -
5 Hb_000310_060 0.1244472657 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
6 Hb_010868_040 0.124649945 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
7 Hb_003299_020 0.1266945021 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
8 Hb_004855_020 0.1375074794 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
9 Hb_005527_060 0.1398982611 - - malic enzyme, putative [Ricinus communis]
10 Hb_002641_120 0.1411131751 - - PREDICTED: calmodulin [Jatropha curcas]
11 Hb_002016_140 0.1436307097 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
12 Hb_002085_090 0.1437090342 - - -
13 Hb_004102_080 0.1475654947 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
14 Hb_002432_050 0.1477819844 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
15 Hb_000926_040 0.1478368505 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
16 Hb_005545_020 0.1499526515 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
17 Hb_010381_040 0.1551643793 - - beta-galactosidase, putative [Ricinus communis]
18 Hb_004679_040 0.1552693026 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
19 Hb_001040_060 0.155573283 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
20 Hb_000940_030 0.1569487393 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000009_420 Hb_000009_420 Hb_003398_040 Hb_003398_040 Hb_000009_420--Hb_003398_040 Hb_000753_110 Hb_000753_110 Hb_000009_420--Hb_000753_110 Hb_000416_190 Hb_000416_190 Hb_000009_420--Hb_000416_190 Hb_000310_060 Hb_000310_060 Hb_000009_420--Hb_000310_060 Hb_010868_040 Hb_010868_040 Hb_000009_420--Hb_010868_040 Hb_003299_020 Hb_003299_020 Hb_000009_420--Hb_003299_020 Hb_003398_040--Hb_000310_060 Hb_001587_040 Hb_001587_040 Hb_003398_040--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_003398_040--Hb_005527_060 Hb_003398_040--Hb_010868_040 Hb_003398_040--Hb_000753_110 Hb_000753_110--Hb_003299_020 Hb_002641_120 Hb_002641_120 Hb_000753_110--Hb_002641_120 Hb_000753_110--Hb_000310_060 Hb_000186_030 Hb_000186_030 Hb_000753_110--Hb_000186_030 Hb_004306_130 Hb_004306_130 Hb_000416_190--Hb_004306_130 Hb_000416_190--Hb_010868_040 Hb_002095_050 Hb_002095_050 Hb_000416_190--Hb_002095_050 Hb_000416_190--Hb_003398_040 Hb_000120_300 Hb_000120_300 Hb_000416_190--Hb_000120_300 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_000310_060--Hb_001587_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_000310_060--Hb_005527_060 Hb_004855_020 Hb_004855_020 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_010868_040--Hb_000940_030 Hb_000207_350 Hb_000207_350 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040 Hb_005545_020 Hb_005545_020 Hb_003299_020--Hb_005545_020 Hb_010672_050 Hb_010672_050 Hb_003299_020--Hb_010672_050 Hb_001377_530 Hb_001377_530 Hb_003299_020--Hb_001377_530 Hb_003299_020--Hb_003398_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109985 3.03929 9.5234 4.3907 0.0692474 0.278833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.624085 1.06635 0.294179 3.19838 4.50262

CAGE analysis