Hb_005527_060

Information

Type -
Description -
Location Contig5527: 37599-45961
Sequence    

Annotation

kegg
ID rcu:RCOM_1614520
description malic enzyme, putative (EC:1.1.1.39)
nr
ID XP_002511819.1
description malic enzyme, putative [Ricinus communis]
swissprot
ID P37225
description NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9RDN0
description Malic enzyme OS=Ricinus communis GN=RCOM_1614520 PE=3 SV=1
Gene Ontology
ID GO:0009507
description nad-dependent malic enzyme 59 kda mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48316: 37603-46246 , PASA_asmbl_48317: 37620-46246 , PASA_asmbl_48318: 38630-43162 , PASA_asmbl_48320: 43591-43823 , PASA_asmbl_48321: 43510-44540 , PASA_asmbl_48322: 38484-38592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005527_060 0.0 - - malic enzyme, putative [Ricinus communis]
2 Hb_002432_050 0.0877523598 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
3 Hb_000310_060 0.0919668624 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
4 Hb_003398_040 0.0979635641 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
5 Hb_001587_040 0.0998127227 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
6 Hb_000589_170 0.1148889636 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
7 Hb_000011_560 0.1177530413 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
8 Hb_000996_080 0.1206001674 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
9 Hb_000940_030 0.1220058865 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
10 Hb_000327_200 0.1242193077 - - glutathione-s-transferase omega, putative [Ricinus communis]
11 Hb_002942_140 0.1245592002 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
12 Hb_101334_020 0.1256801826 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
13 Hb_002942_120 0.1272122035 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
14 Hb_000792_050 0.128382684 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000331_570 0.1296063482 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
16 Hb_000212_250 0.1300843013 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000270_280 0.1303324166 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
18 Hb_004440_070 0.1307578015 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Jatropha curcas]
19 Hb_001390_100 0.1315159682 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
20 Hb_001922_110 0.1316467977 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005527_060 Hb_005527_060 Hb_002432_050 Hb_002432_050 Hb_005527_060--Hb_002432_050 Hb_000310_060 Hb_000310_060 Hb_005527_060--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_005527_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_005527_060--Hb_001587_040 Hb_000589_170 Hb_000589_170 Hb_005527_060--Hb_000589_170 Hb_000011_560 Hb_000011_560 Hb_005527_060--Hb_000011_560 Hb_000594_060 Hb_000594_060 Hb_002432_050--Hb_000594_060 Hb_001663_130 Hb_001663_130 Hb_002432_050--Hb_001663_130 Hb_013968_010 Hb_013968_010 Hb_002432_050--Hb_013968_010 Hb_011188_010 Hb_011188_010 Hb_002432_050--Hb_011188_010 Hb_001117_080 Hb_001117_080 Hb_002432_050--Hb_001117_080 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_000310_060--Hb_003398_040 Hb_000310_060--Hb_001587_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_000009_420 Hb_000009_420 Hb_003398_040--Hb_000009_420 Hb_003398_040--Hb_001587_040 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_000753_110 Hb_000753_110 Hb_003398_040--Hb_000753_110 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_000307_070 Hb_000307_070 Hb_001587_040--Hb_000307_070 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_023091_010 Hb_023091_010 Hb_000589_170--Hb_023091_010 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_004545_120 Hb_004545_120 Hb_000011_560--Hb_004545_120 Hb_000011_560--Hb_000310_060 Hb_000011_560--Hb_001587_040 Hb_000011_560--Hb_000327_200 Hb_003664_030 Hb_003664_030 Hb_000011_560--Hb_003664_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.68511 24.6841 103.706 34.2052 4.39498 5.58092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.14111 9.00745 9.45465 28.0772 49.8014

CAGE analysis