Hb_023091_010

Information

Type -
Description -
Location Contig23091: 14401-24745
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06670g
description POPTRDRAFT_576461; hypothetical protein
nr
ID XP_002322768.2
description hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
swissprot
ID Q9ZT42
description E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1
trembl
ID B9IIH4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06670g PE=4 SV=2
Gene Ontology
ID GO:0044464
description ring-h2 group f2a isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24278: 18358-19566 , PASA_asmbl_24279: 22610-23282 , PASA_asmbl_24280: 23753-24653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023091_010 0.0 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
2 Hb_001247_210 0.0978963002 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008375_030 0.1047353556 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
4 Hb_000979_140 0.1054512908 - - kinase family protein [Populus trichocarpa]
5 Hb_000589_170 0.1078784405 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
6 Hb_004577_010 0.1126737198 - - PREDICTED: transmembrane protein 45A [Prunus mume]
7 Hb_002026_090 0.1128481668 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
8 Hb_004718_060 0.1152362839 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
9 Hb_021596_020 0.117292592 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
10 Hb_003058_140 0.1173982496 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000300_560 0.1187018148 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
12 Hb_000137_010 0.1217657721 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
13 Hb_001009_140 0.1228081307 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
14 Hb_008120_040 0.1228093573 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
15 Hb_000260_160 0.1257181331 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
16 Hb_011188_010 0.1271324708 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
17 Hb_015778_040 0.1299500551 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
18 Hb_006438_020 0.1308259108 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
19 Hb_005665_090 0.1314383853 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
20 Hb_004052_110 0.1320511809 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023091_010 Hb_023091_010 Hb_001247_210 Hb_001247_210 Hb_023091_010--Hb_001247_210 Hb_008375_030 Hb_008375_030 Hb_023091_010--Hb_008375_030 Hb_000979_140 Hb_000979_140 Hb_023091_010--Hb_000979_140 Hb_000589_170 Hb_000589_170 Hb_023091_010--Hb_000589_170 Hb_004577_010 Hb_004577_010 Hb_023091_010--Hb_004577_010 Hb_002026_090 Hb_002026_090 Hb_023091_010--Hb_002026_090 Hb_001247_210--Hb_004577_010 Hb_004718_060 Hb_004718_060 Hb_001247_210--Hb_004718_060 Hb_001247_210--Hb_002026_090 Hb_002249_170 Hb_002249_170 Hb_001247_210--Hb_002249_170 Hb_011188_010 Hb_011188_010 Hb_001247_210--Hb_011188_010 Hb_001623_490 Hb_001623_490 Hb_008375_030--Hb_001623_490 Hb_002194_050 Hb_002194_050 Hb_008375_030--Hb_002194_050 Hb_005665_090 Hb_005665_090 Hb_008375_030--Hb_005665_090 Hb_002218_020 Hb_002218_020 Hb_008375_030--Hb_002218_020 Hb_012779_080 Hb_012779_080 Hb_008375_030--Hb_012779_080 Hb_012438_030 Hb_012438_030 Hb_008375_030--Hb_012438_030 Hb_001729_020 Hb_001729_020 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000589_170--Hb_000979_140 Hb_000300_560 Hb_000300_560 Hb_004577_010--Hb_000300_560 Hb_004577_010--Hb_011188_010 Hb_004162_220 Hb_004162_220 Hb_004577_010--Hb_004162_220 Hb_001663_130 Hb_001663_130 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140 Hb_004158_050 Hb_004158_050 Hb_002026_090--Hb_004158_050 Hb_002026_090--Hb_001623_490 Hb_000327_330 Hb_000327_330 Hb_002026_090--Hb_000327_330 Hb_001160_110 Hb_001160_110 Hb_002026_090--Hb_001160_110 Hb_002026_090--Hb_001663_130 Hb_003687_080 Hb_003687_080 Hb_002026_090--Hb_003687_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53336 4.81408 8.97338 4.29806 0.522121 2.4909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00352 1.90931 1.00431 3.38135 5.59316

CAGE analysis