Hb_001247_210

Information

Type -
Description -
Location Contig1247: 139948-143618
Sequence    

Annotation

kegg
ID rcu:RCOM_1436610
description hypothetical protein
nr
ID XP_002512574.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFQ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1436610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07492: 144226-144467 , PASA_asmbl_07493: 139900-144220 , PASA_asmbl_07494: 140645-144757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_023091_010 0.0978963002 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
3 Hb_004577_010 0.0993095221 - - PREDICTED: transmembrane protein 45A [Prunus mume]
4 Hb_004718_060 0.1040132507 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
5 Hb_002026_090 0.1058865215 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
6 Hb_002249_170 0.1076796265 - - copine, putative [Ricinus communis]
7 Hb_011188_010 0.11286638 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
8 Hb_007416_260 0.114322861 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
9 Hb_000477_070 0.1148215936 - - histone h2a, putative [Ricinus communis]
10 Hb_001663_130 0.1197637292 - - acyl-CoA thioesterase, putative [Ricinus communis]
11 Hb_000260_160 0.1197670876 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
12 Hb_011671_110 0.1217253335 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
13 Hb_000979_140 0.1231286285 - - kinase family protein [Populus trichocarpa]
14 Hb_000212_300 0.1241366149 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
15 Hb_000418_050 0.125595277 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
16 Hb_000445_210 0.1257953918 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
17 Hb_001001_090 0.1268090275 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
18 Hb_002804_010 0.1273312755 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
19 Hb_000375_060 0.1275658388 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
20 Hb_001059_060 0.1282665777 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_001247_210 Hb_001247_210 Hb_023091_010 Hb_023091_010 Hb_001247_210--Hb_023091_010 Hb_004577_010 Hb_004577_010 Hb_001247_210--Hb_004577_010 Hb_004718_060 Hb_004718_060 Hb_001247_210--Hb_004718_060 Hb_002026_090 Hb_002026_090 Hb_001247_210--Hb_002026_090 Hb_002249_170 Hb_002249_170 Hb_001247_210--Hb_002249_170 Hb_011188_010 Hb_011188_010 Hb_001247_210--Hb_011188_010 Hb_008375_030 Hb_008375_030 Hb_023091_010--Hb_008375_030 Hb_000979_140 Hb_000979_140 Hb_023091_010--Hb_000979_140 Hb_000589_170 Hb_000589_170 Hb_023091_010--Hb_000589_170 Hb_023091_010--Hb_004577_010 Hb_023091_010--Hb_002026_090 Hb_000300_560 Hb_000300_560 Hb_004577_010--Hb_000300_560 Hb_004577_010--Hb_011188_010 Hb_004162_220 Hb_004162_220 Hb_004577_010--Hb_004162_220 Hb_001663_130 Hb_001663_130 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140 Hb_009178_010 Hb_009178_010 Hb_004718_060--Hb_009178_010 Hb_000956_040 Hb_000956_040 Hb_004718_060--Hb_000956_040 Hb_005873_020 Hb_005873_020 Hb_004718_060--Hb_005873_020 Hb_000172_360 Hb_000172_360 Hb_004718_060--Hb_000172_360 Hb_005305_100 Hb_005305_100 Hb_004718_060--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_004718_060--Hb_000260_760 Hb_004158_050 Hb_004158_050 Hb_002026_090--Hb_004158_050 Hb_001623_490 Hb_001623_490 Hb_002026_090--Hb_001623_490 Hb_000327_330 Hb_000327_330 Hb_002026_090--Hb_000327_330 Hb_001160_110 Hb_001160_110 Hb_002026_090--Hb_001160_110 Hb_002026_090--Hb_001663_130 Hb_003687_080 Hb_003687_080 Hb_002026_090--Hb_003687_080 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_002249_170--Hb_086639_050 Hb_009078_020 Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39416 15.8307 24.1637 11.2479 2.47165 5.74809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28051 3.5714 1.02644 7.19547 12.1348

CAGE analysis