Hb_001318_150

Information

Type -
Description -
Location Contig1318: 129887-134773
Sequence    

Annotation

kegg
ID rcu:RCOM_1345100
description Glycogen synthase kinase-3 beta, putative (EC:2.7.11.26)
nr
ID XP_012082965.1
description PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
swissprot
ID P51139
description Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa GN=MSK-3 PE=2 SV=2
trembl
ID A0A067JWH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14082 PE=4 SV=1
Gene Ontology
ID GO:0004672
description shaggy-related protein kinase alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09218: 129957-134737
cDNA
(Sanger)
(ID:Location)		 004_N08.ab1: 130074-132728 , 027_I21.ab1: 130057-132717

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_150 0.0 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
2 Hb_002249_170 0.0974868052 - - copine, putative [Ricinus communis]
3 Hb_000272_110 0.1143071582 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
4 Hb_001085_300 0.11513315 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
5 Hb_086639_050 0.1164145232 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_048476_040 0.1167831964 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
7 Hb_000111_390 0.1216961243 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
8 Hb_054865_050 0.1225231847 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_004837_220 0.1248111778 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
10 Hb_005064_070 0.1268364722 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
11 Hb_080147_020 0.1307036333 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
12 Hb_161901_020 0.1311018268 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
13 Hb_012545_030 0.1317808707 - - Polyadenylate-binding protein RBP47C [Glycine soja]
14 Hb_011671_110 0.1335809684 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
15 Hb_001898_130 0.133913958 - - ATP binding protein, putative [Ricinus communis]
16 Hb_056196_060 0.1353202741 - - hexokinase [Manihot esculenta]
17 Hb_132840_020 0.1363104959 - - PREDICTED: protein LHY [Jatropha curcas]
18 Hb_000375_060 0.1403781125 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
19 Hb_001246_160 0.1406118483 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
20 Hb_018790_050 0.1412099569 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]

Gene co-expression network

sample Hb_001318_150 Hb_001318_150 Hb_002249_170 Hb_002249_170 Hb_001318_150--Hb_002249_170 Hb_000272_110 Hb_000272_110 Hb_001318_150--Hb_000272_110 Hb_001085_300 Hb_001085_300 Hb_001318_150--Hb_001085_300 Hb_086639_050 Hb_086639_050 Hb_001318_150--Hb_086639_050 Hb_048476_040 Hb_048476_040 Hb_001318_150--Hb_048476_040 Hb_000111_390 Hb_000111_390 Hb_001318_150--Hb_000111_390 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210 Hb_000272_110--Hb_001085_300 Hb_007007_080 Hb_007007_080 Hb_000272_110--Hb_007007_080 Hb_001246_160 Hb_001246_160 Hb_000272_110--Hb_001246_160 Hb_001898_130 Hb_001898_130 Hb_000272_110--Hb_001898_130 Hb_002876_070 Hb_002876_070 Hb_000272_110--Hb_002876_070 Hb_056196_060 Hb_056196_060 Hb_001085_300--Hb_056196_060 Hb_008112_010 Hb_008112_010 Hb_001085_300--Hb_008112_010 Hb_003018_030 Hb_003018_030 Hb_001085_300--Hb_003018_030 Hb_004837_220 Hb_004837_220 Hb_001085_300--Hb_004837_220 Hb_002411_160 Hb_002411_160 Hb_086639_050--Hb_002411_160 Hb_080147_020 Hb_080147_020 Hb_086639_050--Hb_080147_020 Hb_001117_080 Hb_001117_080 Hb_086639_050--Hb_001117_080 Hb_000567_090 Hb_000567_090 Hb_086639_050--Hb_000567_090 Hb_086639_050--Hb_000111_390 Hb_005064_070 Hb_005064_070 Hb_048476_040--Hb_005064_070 Hb_132840_020 Hb_132840_020 Hb_048476_040--Hb_132840_020 Hb_000329_790 Hb_000329_790 Hb_048476_040--Hb_000329_790 Hb_005080_020 Hb_005080_020 Hb_048476_040--Hb_005080_020 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050 Hb_000111_390--Hb_011671_110 Hb_001627_010 Hb_001627_010 Hb_000111_390--Hb_001627_010 Hb_047442_010 Hb_047442_010 Hb_000111_390--Hb_047442_010 Hb_000111_390--Hb_002249_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4338 86.6853 115.632 48.9128 5.07516 7.28058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.72671 14.5369 11.9725 38.5531 26.5996

CAGE analysis