Hb_047442_010

Information

Type -
Description -
Location Contig47442: 6-839
Sequence    

Annotation

kegg
ID rcu:RCOM_0035170
description double-stranded RNA binding protein, putative
nr
ID XP_012064817.1
description PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
swissprot
ID Q9SKN2
description Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1
trembl
ID A0A067L6J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05514 PE=4 SV=1
Gene Ontology
ID GO:0040029
description double-stranded rna-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047442_010 0.0 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
2 Hb_011671_110 0.0961559681 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
3 Hb_002965_070 0.1007187316 - - PREDICTED: extensin [Jatropha curcas]
4 Hb_005394_010 0.1059023937 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
5 Hb_000317_190 0.1085949704 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
6 Hb_000111_390 0.1137847032 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
7 Hb_001894_160 0.1168267584 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001776_200 0.1171550497 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
9 Hb_003747_050 0.1207757926 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
10 Hb_005941_020 0.1208387759 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
11 Hb_033930_010 0.121386815 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
12 Hb_008020_020 0.1279688266 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
13 Hb_032202_050 0.1390508915 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
14 Hb_161901_020 0.1417272525 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
15 Hb_015026_040 0.1432581978 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
16 Hb_015026_020 0.1447872323 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
17 Hb_000221_230 0.1451311642 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
18 Hb_001318_150 0.145247631 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
19 Hb_001627_010 0.1462440589 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
20 Hb_089114_010 0.1491114151 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]

Gene co-expression network

sample Hb_047442_010 Hb_047442_010 Hb_011671_110 Hb_011671_110 Hb_047442_010--Hb_011671_110 Hb_002965_070 Hb_002965_070 Hb_047442_010--Hb_002965_070 Hb_005394_010 Hb_005394_010 Hb_047442_010--Hb_005394_010 Hb_000317_190 Hb_000317_190 Hb_047442_010--Hb_000317_190 Hb_000111_390 Hb_000111_390 Hb_047442_010--Hb_000111_390 Hb_001894_160 Hb_001894_160 Hb_047442_010--Hb_001894_160 Hb_011671_110--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_011671_110--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_011671_110--Hb_033930_010 Hb_015026_020 Hb_015026_020 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_011671_110--Hb_005394_010 Hb_089114_010 Hb_089114_010 Hb_002965_070--Hb_089114_010 Hb_002965_070--Hb_000317_190 Hb_000563_510 Hb_000563_510 Hb_002965_070--Hb_000563_510 Hb_000308_010 Hb_000308_010 Hb_002965_070--Hb_000308_010 Hb_002965_070--Hb_033930_010 Hb_041895_040 Hb_041895_040 Hb_005394_010--Hb_041895_040 Hb_001246_160 Hb_001246_160 Hb_005394_010--Hb_001246_160 Hb_015026_040 Hb_015026_040 Hb_005394_010--Hb_015026_040 Hb_000163_230 Hb_000163_230 Hb_005394_010--Hb_000163_230 Hb_000317_190--Hb_005941_020 Hb_124951_010 Hb_124951_010 Hb_000317_190--Hb_124951_010 Hb_000317_190--Hb_001894_160 Hb_000317_190--Hb_011671_110 Hb_000317_190--Hb_015026_020 Hb_000111_390--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_000111_390--Hb_086639_050 Hb_001627_010 Hb_001627_010 Hb_000111_390--Hb_001627_010 Hb_002249_170 Hb_002249_170 Hb_000111_390--Hb_002249_170 Hb_001318_150 Hb_001318_150 Hb_000111_390--Hb_001318_150 Hb_001894_160--Hb_005941_020 Hb_001894_160--Hb_033930_010 Hb_000928_250 Hb_000928_250 Hb_001894_160--Hb_000928_250 Hb_001894_160--Hb_015026_020 Hb_000622_210 Hb_000622_210 Hb_001894_160--Hb_000622_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5161 50.1248 71.0028 19.8649 6.62044 4.50539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.02468 2.9136 2.18894 11.1473 10.0234

CAGE analysis