Hb_001627_010

Information

Type -
Description -
Location Contig1627: 51268-53729
Sequence    

Annotation

kegg
ID rcu:RCOM_1468610
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative (EC:2.4.1.186)
nr
ID XP_002514626.1
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
swissprot
ID Q6Z4G3
description UDP-arabinopyranose mutase 3 OS=Oryza sativa subsp. japonica GN=UAM3 PE=1 SV=1
trembl
ID B9RLK7
description Alpha-1,4-glucan-protein synthase [UDP-forming], putative OS=Ricinus communis GN=RCOM_1468610 PE=4 SV=1
Gene Ontology
ID GO:0008466
description alpha- -glucan-protein synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14756: 51275-53812
cDNA
(Sanger)
(ID:Location)		 003_I06.ab1: 51275-52890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001627_010 0.0 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
2 Hb_002014_050 0.0770318854 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
3 Hb_007224_010 0.0971380282 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
4 Hb_132840_020 0.1009724938 - - PREDICTED: protein LHY [Jatropha curcas]
5 Hb_001294_050 0.1078316096 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
6 Hb_001519_060 0.1093788896 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
7 Hb_000111_390 0.1126924938 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
8 Hb_014361_170 0.1133978029 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
9 Hb_011381_070 0.1250028011 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
10 Hb_002609_290 0.1252907977 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
11 Hb_007904_290 0.1258262881 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
12 Hb_001040_060 0.1324469899 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
13 Hb_001102_090 0.1333777583 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
14 Hb_000035_490 0.1343020248 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
15 Hb_002217_190 0.1364278586 - - invertase [Hevea brasiliensis]
16 Hb_000071_090 0.1376948741 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
17 Hb_000366_050 0.1385993833 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
18 Hb_011671_110 0.1388029426 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
19 Hb_021409_110 0.1401438719 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_089305_010 0.1401439138 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_001627_010 Hb_001627_010 Hb_002014_050 Hb_002014_050 Hb_001627_010--Hb_002014_050 Hb_007224_010 Hb_007224_010 Hb_001627_010--Hb_007224_010 Hb_132840_020 Hb_132840_020 Hb_001627_010--Hb_132840_020 Hb_001294_050 Hb_001294_050 Hb_001627_010--Hb_001294_050 Hb_001519_060 Hb_001519_060 Hb_001627_010--Hb_001519_060 Hb_000111_390 Hb_000111_390 Hb_001627_010--Hb_000111_390 Hb_007904_290 Hb_007904_290 Hb_002014_050--Hb_007904_290 Hb_002014_050--Hb_001294_050 Hb_002609_290 Hb_002609_290 Hb_002014_050--Hb_002609_290 Hb_000071_090 Hb_000071_090 Hb_002014_050--Hb_000071_090 Hb_002014_050--Hb_000111_390 Hb_021409_110 Hb_021409_110 Hb_007224_010--Hb_021409_110 Hb_007224_010--Hb_132840_020 Hb_007224_010--Hb_001519_060 Hb_000086_640 Hb_000086_640 Hb_007224_010--Hb_000086_640 Hb_000928_250 Hb_000928_250 Hb_007224_010--Hb_000928_250 Hb_132840_020--Hb_001294_050 Hb_132840_020--Hb_000086_640 Hb_048476_040 Hb_048476_040 Hb_132840_020--Hb_048476_040 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_000329_790 Hb_000329_790 Hb_132840_020--Hb_000329_790 Hb_001102_090 Hb_001102_090 Hb_001294_050--Hb_001102_090 Hb_000336_180 Hb_000336_180 Hb_001294_050--Hb_000336_180 Hb_001294_050--Hb_048476_040 Hb_005725_280 Hb_005725_280 Hb_001294_050--Hb_005725_280 Hb_002965_080 Hb_002965_080 Hb_001519_060--Hb_002965_080 Hb_001396_120 Hb_001396_120 Hb_001519_060--Hb_001396_120 Hb_001579_070 Hb_001579_070 Hb_001519_060--Hb_001579_070 Hb_002217_190 Hb_002217_190 Hb_001519_060--Hb_002217_190 Hb_011671_110 Hb_011671_110 Hb_000111_390--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_000111_390--Hb_086639_050 Hb_047442_010 Hb_047442_010 Hb_000111_390--Hb_047442_010 Hb_002249_170 Hb_002249_170 Hb_000111_390--Hb_002249_170 Hb_001318_150 Hb_001318_150 Hb_000111_390--Hb_001318_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8135 133.49 193.223 89.9841 8.81473 5.66936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.63358 9.84582 6.26658 25.0413 52.1304

CAGE analysis