Hb_048476_040

Information

Type -
Description -
Location Contig48476: 27773-30404
Sequence    

Annotation

kegg
ID pxb:103947185
description uncharacterized LOC103947185
nr
ID XP_010277157.1
description PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A068UAK7
description Coffea canephora DH200=94 genomic scaffold, scaffold_16 OS=Coffea canephora GN=GSCOC_T00020736001 PE=4 SV=1
Gene Ontology
ID GO:0009536
description aspartate-semialdehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44939: 27814-36284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_040 0.0 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
2 Hb_005064_070 0.0795776945 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
3 Hb_132840_020 0.0983687779 - - PREDICTED: protein LHY [Jatropha curcas]
4 Hb_000329_790 0.1006155143 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
5 Hb_005080_020 0.1056476833 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
6 Hb_054865_050 0.1140666621 - - calcium-dependent protein kinase, putative [Ricinus communis]
7 Hb_001294_050 0.116392233 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
8 Hb_001318_150 0.1167831964 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
9 Hb_000009_150 0.1171634835 - - carbohydrate transporter, putative [Ricinus communis]
10 Hb_001898_130 0.1174989396 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001123_190 0.1187073569 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
12 Hb_009449_100 0.1221727266 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
13 Hb_004032_090 0.1252825531 - - PREDICTED: protein AIG1 [Jatropha curcas]
14 Hb_003430_070 0.1296216464 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
15 Hb_005375_070 0.1300473648 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
16 Hb_012366_050 0.1305192828 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
17 Hb_001514_240 0.1322052047 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
18 Hb_001102_090 0.1350772117 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
19 Hb_001102_200 0.1368692122 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
20 Hb_026698_020 0.1382874102 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_048476_040 Hb_048476_040 Hb_005064_070 Hb_005064_070 Hb_048476_040--Hb_005064_070 Hb_132840_020 Hb_132840_020 Hb_048476_040--Hb_132840_020 Hb_000329_790 Hb_000329_790 Hb_048476_040--Hb_000329_790 Hb_005080_020 Hb_005080_020 Hb_048476_040--Hb_005080_020 Hb_054865_050 Hb_054865_050 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050 Hb_003670_030 Hb_003670_030 Hb_005064_070--Hb_003670_030 Hb_005064_070--Hb_000329_790 Hb_005064_070--Hb_054865_050 Hb_009449_100 Hb_009449_100 Hb_005064_070--Hb_009449_100 Hb_000375_060 Hb_000375_060 Hb_005064_070--Hb_000375_060 Hb_132840_020--Hb_001294_050 Hb_000086_640 Hb_000086_640 Hb_132840_020--Hb_000086_640 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_132840_020--Hb_000329_790 Hb_000329_790--Hb_009449_100 Hb_001179_010 Hb_001179_010 Hb_000329_790--Hb_001179_010 Hb_000366_050 Hb_000366_050 Hb_000329_790--Hb_000366_050 Hb_001369_020 Hb_001369_020 Hb_005080_020--Hb_001369_020 Hb_005080_020--Hb_132840_020 Hb_001623_410 Hb_001623_410 Hb_005080_020--Hb_001623_410 Hb_000009_150 Hb_000009_150 Hb_005080_020--Hb_000009_150 Hb_005080_020--Hb_000329_790 Hb_054865_050--Hb_009449_100 Hb_002249_170 Hb_002249_170 Hb_054865_050--Hb_002249_170 Hb_054865_050--Hb_000375_060 Hb_001514_240 Hb_001514_240 Hb_054865_050--Hb_001514_240 Hb_000098_180 Hb_000098_180 Hb_054865_050--Hb_000098_180 Hb_001102_090 Hb_001102_090 Hb_001294_050--Hb_001102_090 Hb_000336_180 Hb_000336_180 Hb_001294_050--Hb_000336_180 Hb_001294_050--Hb_001627_010 Hb_005725_280 Hb_005725_280 Hb_001294_050--Hb_005725_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.586178 6.90195 6.59135 4.40613 0.371983 0.263402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.337695 0.53126 1.04824 2.6885 2.6749

CAGE analysis