Hb_001514_240

Information

Type -
Description -
Location Contig1514: 234886-244919
Sequence    

Annotation

kegg
ID rcu:RCOM_1588220
description Aspartic proteinase nepenthesin-1 precursor, putative (EC:3.4.23.1)
nr
ID XP_012068262.1
description PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
swissprot
ID Q9S9K4
description Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2
trembl
ID A0A067L364
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16060 PE=3 SV=1
Gene Ontology
ID GO:0005768
description aspartic proteinase-like protein 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12844: 234923-235054 , PASA_asmbl_12845: 235075-244973 , PASA_asmbl_12846: 243449-244973 , PASA_asmbl_12847: 237245-237977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_240 0.0 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
2 Hb_026698_020 0.0724306651 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_002259_220 0.0750378349 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
4 Hb_009449_100 0.0819590797 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
5 Hb_001499_070 0.0921892017 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
6 Hb_013968_010 0.0990880188 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
7 Hb_187005_010 0.1008334989 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
8 Hb_004052_110 0.1008410465 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
9 Hb_132840_030 0.10238029 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
10 Hb_001059_060 0.1038145142 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
11 Hb_054865_050 0.1064166404 - - calcium-dependent protein kinase, putative [Ricinus communis]
12 Hb_002804_010 0.1074522643 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
13 Hb_000329_790 0.1120809893 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
14 Hb_009078_020 0.1126421392 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
15 Hb_002383_050 0.1137440706 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
16 Hb_024714_070 0.1155734529 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
17 Hb_011188_010 0.1158252937 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
18 Hb_000477_070 0.1163612038 - - histone h2a, putative [Ricinus communis]
19 Hb_000227_320 0.1174713493 - - unnamed protein product [Vitis vinifera]
20 Hb_007290_070 0.1176586175 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001514_240 Hb_001514_240 Hb_026698_020 Hb_026698_020 Hb_001514_240--Hb_026698_020 Hb_002259_220 Hb_002259_220 Hb_001514_240--Hb_002259_220 Hb_009449_100 Hb_009449_100 Hb_001514_240--Hb_009449_100 Hb_001499_070 Hb_001499_070 Hb_001514_240--Hb_001499_070 Hb_013968_010 Hb_013968_010 Hb_001514_240--Hb_013968_010 Hb_187005_010 Hb_187005_010 Hb_001514_240--Hb_187005_010 Hb_000417_410 Hb_000417_410 Hb_026698_020--Hb_000417_410 Hb_026698_020--Hb_009449_100 Hb_002888_040 Hb_002888_040 Hb_026698_020--Hb_002888_040 Hb_001195_230 Hb_001195_230 Hb_026698_020--Hb_001195_230 Hb_132840_030 Hb_132840_030 Hb_026698_020--Hb_132840_030 Hb_004052_110 Hb_004052_110 Hb_002259_220--Hb_004052_110 Hb_011188_010 Hb_011188_010 Hb_002259_220--Hb_011188_010 Hb_009078_020 Hb_009078_020 Hb_002259_220--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_002259_220--Hb_001059_060 Hb_000477_070 Hb_000477_070 Hb_002259_220--Hb_000477_070 Hb_054865_050 Hb_054865_050 Hb_009449_100--Hb_054865_050 Hb_005064_070 Hb_005064_070 Hb_009449_100--Hb_005064_070 Hb_009449_100--Hb_002259_220 Hb_000329_790 Hb_000329_790 Hb_009449_100--Hb_000329_790 Hb_001499_070--Hb_187005_010 Hb_000175_270 Hb_000175_270 Hb_001499_070--Hb_000175_270 Hb_007290_070 Hb_007290_070 Hb_001499_070--Hb_007290_070 Hb_001499_070--Hb_013968_010 Hb_001408_020 Hb_001408_020 Hb_001499_070--Hb_001408_020 Hb_001821_060 Hb_001821_060 Hb_013968_010--Hb_001821_060 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_003226_090 Hb_003226_090 Hb_013968_010--Hb_003226_090 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_187005_010--Hb_000175_270 Hb_187005_010--Hb_007290_070 Hb_187005_010--Hb_001408_020 Hb_002804_010 Hb_002804_010 Hb_187005_010--Hb_002804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10076 26.7012 25.0517 18.2655 2.16044 3.4259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70136 2.36346 3.16959 13.6889 22.401

CAGE analysis