Hb_187005_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig187005: 2834-6558
Sequence    

Annotation

kegg
ID rcu:RCOM_1771650
description DNA binding protein, putative
nr
ID XP_012092616.1
description PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J9F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05274 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18475: 2870-6620 , PASA_asmbl_18476: 4708-4985
cDNA
(Sanger)
(ID:Location)		 010_L18.ab1: 2913-3627

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187005_010 0.0 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
2 Hb_001499_070 0.0522795359 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
3 Hb_000175_270 0.0727130842 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
4 Hb_001514_240 0.1008334989 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
5 Hb_007290_070 0.101820143 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
6 Hb_001408_020 0.1044744906 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
7 Hb_002804_010 0.1158142836 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
8 Hb_005183_140 0.1177172612 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
9 Hb_000340_360 0.1207553481 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
10 Hb_002383_050 0.1226147761 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
11 Hb_006794_020 0.1227978252 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
12 Hb_005539_100 0.1234025484 - - nucleoside transporter, putative [Ricinus communis]
13 Hb_002073_020 0.1236749656 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
14 Hb_013968_010 0.1245341367 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
15 Hb_083078_010 0.1246170184 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
16 Hb_005288_050 0.1262373971 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
17 Hb_000753_140 0.1266438092 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
18 Hb_000035_060 0.1310127792 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
19 Hb_172676_010 0.1319113064 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
20 Hb_001386_020 0.1322331827 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_187005_010 Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_187005_010--Hb_001499_070 Hb_000175_270 Hb_000175_270 Hb_187005_010--Hb_000175_270 Hb_001514_240 Hb_001514_240 Hb_187005_010--Hb_001514_240 Hb_007290_070 Hb_007290_070 Hb_187005_010--Hb_007290_070 Hb_001408_020 Hb_001408_020 Hb_187005_010--Hb_001408_020 Hb_002804_010 Hb_002804_010 Hb_187005_010--Hb_002804_010 Hb_001499_070--Hb_000175_270 Hb_001499_070--Hb_007290_070 Hb_001499_070--Hb_001514_240 Hb_013968_010 Hb_013968_010 Hb_001499_070--Hb_013968_010 Hb_001499_070--Hb_001408_020 Hb_000221_180 Hb_000221_180 Hb_000175_270--Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360 Hb_026698_020 Hb_026698_020 Hb_001514_240--Hb_026698_020 Hb_002259_220 Hb_002259_220 Hb_001514_240--Hb_002259_220 Hb_009449_100 Hb_009449_100 Hb_001514_240--Hb_009449_100 Hb_001514_240--Hb_013968_010 Hb_007290_070--Hb_001408_020 Hb_083078_010 Hb_083078_010 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_009078_020 Hb_009078_020 Hb_001408_020--Hb_009078_020 Hb_000732_230 Hb_000732_230 Hb_001408_020--Hb_000732_230 Hb_002809_160 Hb_002809_160 Hb_001408_020--Hb_002809_160 Hb_000227_320 Hb_000227_320 Hb_001408_020--Hb_000227_320 Hb_005288_050 Hb_005288_050 Hb_002804_010--Hb_005288_050 Hb_002387_040 Hb_002387_040 Hb_002804_010--Hb_002387_040 Hb_000418_050 Hb_000418_050 Hb_002804_010--Hb_000418_050 Hb_024714_070 Hb_024714_070 Hb_002804_010--Hb_024714_070 Hb_000753_140 Hb_000753_140 Hb_002804_010--Hb_000753_140 Hb_001951_240 Hb_001951_240 Hb_002804_010--Hb_001951_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24886 24.0562 17.0981 9.90148 3.28405 2.74556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03014 1.63674 1.21556 9.96792 18.5743

CAGE analysis