Hb_014006_010

Information

Type -
Description -
Location Contig14006: 3539-27381
Sequence    

Annotation

kegg
ID rcu:RCOM_0464910
description hypothetical protein
nr
ID XP_012089581.1
description PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9A3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01497 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10910: 3770-25859 , PASA_asmbl_10911: 18487-23746 , PASA_asmbl_10915: 24520-24675 , PASA_asmbl_10916: 26221-27115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014006_010 0.0 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
2 Hb_013399_090 0.0770234437 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
3 Hb_000340_360 0.0770569554 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
4 Hb_004586_090 0.0786682217 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
5 Hb_002078_470 0.0896900476 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
6 Hb_000221_180 0.0901296041 - - VQ motif-containing family protein [Populus trichocarpa]
7 Hb_000154_130 0.0974845986 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
8 Hb_005183_140 0.0995000372 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
9 Hb_003124_270 0.1003457731 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
10 Hb_000243_400 0.1011743551 - - PREDICTED: nucleolin-like [Jatropha curcas]
11 Hb_000445_130 0.1013532093 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
12 Hb_000369_080 0.1021534429 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
13 Hb_000167_120 0.1081933983 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
14 Hb_000404_030 0.108288001 - - PREDICTED: protein NAP1 [Jatropha curcas]
15 Hb_000844_050 0.1095133302 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
16 Hb_006794_020 0.1106756095 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
17 Hb_000320_360 0.1128612879 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
18 Hb_007012_040 0.1137516335 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
19 Hb_000413_250 0.1138934804 - - Cysteine-rich RLK 29 [Theobroma cacao]
20 Hb_000175_270 0.1151950472 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_014006_010 Hb_014006_010 Hb_013399_090 Hb_013399_090 Hb_014006_010--Hb_013399_090 Hb_000340_360 Hb_000340_360 Hb_014006_010--Hb_000340_360 Hb_004586_090 Hb_004586_090 Hb_014006_010--Hb_004586_090 Hb_002078_470 Hb_002078_470 Hb_014006_010--Hb_002078_470 Hb_000221_180 Hb_000221_180 Hb_014006_010--Hb_000221_180 Hb_000154_130 Hb_000154_130 Hb_014006_010--Hb_000154_130 Hb_013399_090--Hb_000340_360 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_000320_360 Hb_000320_360 Hb_013399_090--Hb_000320_360 Hb_001408_120 Hb_001408_120 Hb_013399_090--Hb_001408_120 Hb_013399_090--Hb_004586_090 Hb_000369_080 Hb_000369_080 Hb_000340_360--Hb_000369_080 Hb_001951_100 Hb_001951_100 Hb_000340_360--Hb_001951_100 Hb_013405_180 Hb_013405_180 Hb_000340_360--Hb_013405_180 Hb_005183_140 Hb_005183_140 Hb_000340_360--Hb_005183_140 Hb_143629_020 Hb_143629_020 Hb_004586_090--Hb_143629_020 Hb_000243_400 Hb_000243_400 Hb_004586_090--Hb_000243_400 Hb_003124_270 Hb_003124_270 Hb_004586_090--Hb_003124_270 Hb_005181_050 Hb_005181_050 Hb_004586_090--Hb_005181_050 Hb_004586_090--Hb_002078_470 Hb_000844_050 Hb_000844_050 Hb_004586_090--Hb_000844_050 Hb_000428_030 Hb_000428_030 Hb_002078_470--Hb_000428_030 Hb_013358_060 Hb_013358_060 Hb_002078_470--Hb_013358_060 Hb_002078_470--Hb_003124_270 Hb_004551_020 Hb_004551_020 Hb_002078_470--Hb_004551_020 Hb_002078_470--Hb_143629_020 Hb_073973_020 Hb_073973_020 Hb_000221_180--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000221_180--Hb_000175_270 Hb_001496_120 Hb_001496_120 Hb_000221_180--Hb_001496_120 Hb_001307_200 Hb_001307_200 Hb_000221_180--Hb_001307_200 Hb_000221_180--Hb_013399_090 Hb_000445_130 Hb_000445_130 Hb_000154_130--Hb_000445_130 Hb_007012_040 Hb_007012_040 Hb_000154_130--Hb_007012_040 Hb_000367_020 Hb_000367_020 Hb_000154_130--Hb_000367_020 Hb_011021_050 Hb_011021_050 Hb_000154_130--Hb_011021_050 Hb_000154_130--Hb_003124_270 Hb_000154_130--Hb_001951_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82843 12.8535 7.05091 5.51255 2.28393 2.1887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64014 1.65518 2.74899 7.66009 14.0925

CAGE analysis