Hb_013399_090

Information

Type -
Description -
Location Contig13399: 72180-78392
Sequence    

Annotation

kegg
ID rcu:RCOM_0653990
description Phosphatidylcholine: Diacylglycerol Acyltransferase (EC:2.3.1.158)
nr
ID XP_012068907.1
description PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
swissprot
ID Q9FNA9
description Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana GN=PDAT1 PE=2 SV=1
trembl
ID A0A067L9I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24718 PE=4 SV=1
Gene Ontology
ID GO:0008374
description phospholipid:diacylglycerol acyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09574: 72154-78353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013399_090 0.0 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
2 Hb_014006_010 0.0770234437 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
3 Hb_000340_360 0.0929879938 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
4 Hb_000025_500 0.0940901565 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_000320_360 0.0962019794 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
6 Hb_001408_120 0.0971563707 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_004586_090 0.0983874919 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
8 Hb_000066_040 0.1015872988 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
9 Hb_000369_080 0.1018555108 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
10 Hb_021079_020 0.1061444356 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
11 Hb_001341_010 0.1068811486 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
12 Hb_001221_300 0.1071412647 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
13 Hb_015778_060 0.1082712952 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
14 Hb_000243_400 0.11064784 - - PREDICTED: nucleolin-like [Jatropha curcas]
15 Hb_000844_050 0.112037179 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
16 Hb_000359_220 0.1122054192 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
17 Hb_052946_010 0.1123775071 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
18 Hb_000167_120 0.1124395231 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
19 Hb_000186_080 0.11337472 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
20 Hb_001109_160 0.1137436307 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_013399_090 Hb_013399_090 Hb_014006_010 Hb_014006_010 Hb_013399_090--Hb_014006_010 Hb_000340_360 Hb_000340_360 Hb_013399_090--Hb_000340_360 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_000320_360 Hb_000320_360 Hb_013399_090--Hb_000320_360 Hb_001408_120 Hb_001408_120 Hb_013399_090--Hb_001408_120 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090 Hb_014006_010--Hb_000340_360 Hb_014006_010--Hb_004586_090 Hb_002078_470 Hb_002078_470 Hb_014006_010--Hb_002078_470 Hb_000221_180 Hb_000221_180 Hb_014006_010--Hb_000221_180 Hb_000154_130 Hb_000154_130 Hb_014006_010--Hb_000154_130 Hb_000369_080 Hb_000369_080 Hb_000340_360--Hb_000369_080 Hb_001951_100 Hb_001951_100 Hb_000340_360--Hb_001951_100 Hb_013405_180 Hb_013405_180 Hb_000340_360--Hb_013405_180 Hb_005183_140 Hb_005183_140 Hb_000340_360--Hb_005183_140 Hb_000167_120 Hb_000167_120 Hb_000025_500--Hb_000167_120 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_004041_030 Hb_004041_030 Hb_000025_500--Hb_004041_030 Hb_000359_220 Hb_000359_220 Hb_000320_360--Hb_000359_220 Hb_015778_060 Hb_015778_060 Hb_000320_360--Hb_015778_060 Hb_000320_360--Hb_001408_120 Hb_002942_130 Hb_002942_130 Hb_000320_360--Hb_002942_130 Hb_000008_410 Hb_000008_410 Hb_000320_360--Hb_000008_410 Hb_000186_080 Hb_000186_080 Hb_001408_120--Hb_000186_080 Hb_001408_120--Hb_000008_410 Hb_001408_120--Hb_001341_010 Hb_001408_120--Hb_052946_010 Hb_001726_100 Hb_001726_100 Hb_001408_120--Hb_001726_100 Hb_143629_020 Hb_143629_020 Hb_004586_090--Hb_143629_020 Hb_000243_400 Hb_000243_400 Hb_004586_090--Hb_000243_400 Hb_003124_270 Hb_003124_270 Hb_004586_090--Hb_003124_270 Hb_005181_050 Hb_005181_050 Hb_004586_090--Hb_005181_050 Hb_004586_090--Hb_002078_470 Hb_000844_050 Hb_000844_050 Hb_004586_090--Hb_000844_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00511 25.4264 17.6457 16.1236 8.40023 6.75462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55477 3.22187 6.95992 17.5156 39.6827

CAGE analysis