Hb_002942_130

Information

Type -
Description -
Location Contig2942: 134671-140304
Sequence    

Annotation

kegg
ID rcu:RCOM_1504150
description ATP-dependent clp protease, putative
nr
ID XP_012090602.1
description PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
swissprot
ID P35100
description Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067JSN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26380 PE=3 SV=1
Gene Ontology
ID GO:0005524
description chaperone protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30798: 134149-140156 , PASA_asmbl_30799: 133992-140681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_130 0.0 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
2 Hb_004254_100 0.0782994315 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
3 Hb_001437_120 0.1103287881 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
4 Hb_000320_360 0.111431835 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
5 Hb_003734_080 0.1119673522 - - myosin vIII, putative [Ricinus communis]
6 Hb_007192_090 0.115893059 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
7 Hb_011616_040 0.1165712604 - - glucan water dikinase 3, partial [Manihot esculenta]
8 Hb_005883_020 0.119528091 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
9 Hb_001408_030 0.1243403176 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
10 Hb_000264_230 0.1264110845 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
11 Hb_003900_030 0.1280897888 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
12 Hb_003929_220 0.1309908634 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000771_170 0.1318883497 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_000359_220 0.1360965458 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
15 Hb_008092_050 0.1364860156 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
16 Hb_008092_060 0.1378294452 - - -
17 Hb_002986_070 0.1379826918 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
18 Hb_002249_030 0.1400235985 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
19 Hb_005211_020 0.140839699 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
20 Hb_000031_230 0.1409573398 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_130 Hb_002942_130 Hb_004254_100 Hb_004254_100 Hb_002942_130--Hb_004254_100 Hb_001437_120 Hb_001437_120 Hb_002942_130--Hb_001437_120 Hb_000320_360 Hb_000320_360 Hb_002942_130--Hb_000320_360 Hb_003734_080 Hb_003734_080 Hb_002942_130--Hb_003734_080 Hb_007192_090 Hb_007192_090 Hb_002942_130--Hb_007192_090 Hb_011616_040 Hb_011616_040 Hb_002942_130--Hb_011616_040 Hb_003900_030 Hb_003900_030 Hb_004254_100--Hb_003900_030 Hb_000771_170 Hb_000771_170 Hb_004254_100--Hb_000771_170 Hb_001040_070 Hb_001040_070 Hb_004254_100--Hb_001040_070 Hb_001408_030 Hb_001408_030 Hb_004254_100--Hb_001408_030 Hb_005883_020 Hb_005883_020 Hb_004254_100--Hb_005883_020 Hb_028707_110 Hb_028707_110 Hb_001437_120--Hb_028707_110 Hb_001437_120--Hb_001408_030 Hb_002276_070 Hb_002276_070 Hb_001437_120--Hb_002276_070 Hb_008092_060 Hb_008092_060 Hb_001437_120--Hb_008092_060 Hb_000997_140 Hb_000997_140 Hb_001437_120--Hb_000997_140 Hb_003929_220 Hb_003929_220 Hb_001437_120--Hb_003929_220 Hb_013399_090 Hb_013399_090 Hb_000320_360--Hb_013399_090 Hb_000359_220 Hb_000359_220 Hb_000320_360--Hb_000359_220 Hb_015778_060 Hb_015778_060 Hb_000320_360--Hb_015778_060 Hb_001408_120 Hb_001408_120 Hb_000320_360--Hb_001408_120 Hb_000008_410 Hb_000008_410 Hb_000320_360--Hb_000008_410 Hb_002249_030 Hb_002249_030 Hb_003734_080--Hb_002249_030 Hb_003734_080--Hb_007192_090 Hb_003734_080--Hb_004254_100 Hb_000264_230 Hb_000264_230 Hb_003734_080--Hb_000264_230 Hb_000170_160 Hb_000170_160 Hb_003734_080--Hb_000170_160 Hb_001472_160 Hb_001472_160 Hb_007192_090--Hb_001472_160 Hb_001828_120 Hb_001828_120 Hb_007192_090--Hb_001828_120 Hb_007769_040 Hb_007769_040 Hb_007192_090--Hb_007769_040 Hb_002973_110 Hb_002973_110 Hb_007192_090--Hb_002973_110 Hb_025477_050 Hb_025477_050 Hb_007192_090--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007192_090--Hb_000589_110 Hb_011616_040--Hb_002249_030 Hb_000008_280 Hb_000008_280 Hb_011616_040--Hb_000008_280 Hb_008642_060 Hb_008642_060 Hb_011616_040--Hb_008642_060 Hb_001054_120 Hb_001054_120 Hb_011616_040--Hb_001054_120 Hb_001269_050 Hb_001269_050 Hb_011616_040--Hb_001269_050 Hb_011457_140 Hb_011457_140 Hb_011616_040--Hb_011457_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.6395 132.816 98.0274 54.1513 87.1824 55.6671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9047 8.29854 19.9089 57.6401 235.726

CAGE analysis