Hb_002276_070

Information

Type -
Description -
Location Contig2276: 86884-96194
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11190g
description POPTRDRAFT_564455; heat shock family protein
nr
ID XP_012080479.1
description PREDICTED: heat shock protein 83 [Jatropha curcas]
swissprot
ID P02828
description Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1
trembl
ID A0A067K5L6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11793 PE=3 SV=1
Gene Ontology
ID GO:0005524
description heat shock family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23734: 85215-86903 , PASA_asmbl_23735: 88134-95898 , PASA_asmbl_23736: 92776-95898
cDNA
(Sanger)
(ID:Location)		 004_H01.ab1: 94247-95898 , 007_J23.ab1: 94304-95898 , 017_D13.ab1: 94691-95626 , 027_B24.ab1: 94307-95898

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_070 0.0 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
2 Hb_001437_120 0.0929738395 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
3 Hb_002495_060 0.1137666062 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_002368_070 0.1200237318 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
5 Hb_028707_110 0.1213304643 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
6 Hb_004785_070 0.1220782149 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
7 Hb_010488_010 0.1244086644 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
8 Hb_008092_060 0.1296698034 - - -
9 Hb_143629_060 0.1339113435 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
10 Hb_001408_030 0.137862023 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
11 Hb_000069_490 0.1401816999 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011931_060 0.1406312998 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
13 Hb_007313_100 0.146553717 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
14 Hb_002740_190 0.1492878486 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
15 Hb_003077_130 0.1503758952 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
16 Hb_008092_050 0.1511160741 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
17 Hb_000479_170 0.1511689927 - - chaperone clpb, putative [Ricinus communis]
18 Hb_007769_040 0.1522395538 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_031658_040 0.1549176312 - - -
20 Hb_015026_080 0.1572750957 - - -

Gene co-expression network

sample Hb_002276_070 Hb_002276_070 Hb_001437_120 Hb_001437_120 Hb_002276_070--Hb_001437_120 Hb_002495_060 Hb_002495_060 Hb_002276_070--Hb_002495_060 Hb_002368_070 Hb_002368_070 Hb_002276_070--Hb_002368_070 Hb_028707_110 Hb_028707_110 Hb_002276_070--Hb_028707_110 Hb_004785_070 Hb_004785_070 Hb_002276_070--Hb_004785_070 Hb_010488_010 Hb_010488_010 Hb_002276_070--Hb_010488_010 Hb_001437_120--Hb_028707_110 Hb_001408_030 Hb_001408_030 Hb_001437_120--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_001437_120--Hb_008092_060 Hb_000997_140 Hb_000997_140 Hb_001437_120--Hb_000997_140 Hb_003929_220 Hb_003929_220 Hb_001437_120--Hb_003929_220 Hb_000479_170 Hb_000479_170 Hb_002495_060--Hb_000479_170 Hb_002495_060--Hb_001437_120 Hb_002495_060--Hb_010488_010 Hb_002495_060--Hb_028707_110 Hb_002495_060--Hb_002368_070 Hb_006618_050 Hb_006618_050 Hb_002368_070--Hb_006618_050 Hb_011931_060 Hb_011931_060 Hb_002368_070--Hb_011931_060 Hb_005250_030 Hb_005250_030 Hb_002368_070--Hb_005250_030 Hb_002636_110 Hb_002636_110 Hb_002368_070--Hb_002636_110 Hb_001623_280 Hb_001623_280 Hb_002368_070--Hb_001623_280 Hb_031658_040 Hb_031658_040 Hb_002368_070--Hb_031658_040 Hb_028707_110--Hb_000997_140 Hb_000069_490 Hb_000069_490 Hb_028707_110--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_028707_110--Hb_010757_030 Hb_003077_130 Hb_003077_130 Hb_028707_110--Hb_003077_130 Hb_028707_110--Hb_003929_220 Hb_004785_070--Hb_003077_130 Hb_024714_080 Hb_024714_080 Hb_004785_070--Hb_024714_080 Hb_004785_070--Hb_000069_490 Hb_004785_070--Hb_001437_120 Hb_004785_070--Hb_010757_030 Hb_010488_010--Hb_001437_120 Hb_010488_010--Hb_028707_110 Hb_010488_010--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_010488_010--Hb_008092_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0059 26.0322 36.6762 17.9436 55.7546 32.2378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1439 7.37635 7.65397 22.8767 145.5

CAGE analysis