Hb_004785_070

Information

Type -
Description -
Location Contig4785: 79447-88244
Sequence    

Annotation

kegg
ID rcu:RCOM_1170470
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012066046.1
description PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
swissprot
ID Q3UVC0
description Kinase suppressor of Ras 2 OS=Mus musculus GN=Ksr2 PE=2 SV=2
trembl
ID A0A067L3G3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25197 PE=4 SV=1
Gene Ontology
ID GO:0004715
description serine threonine-protein kinase ht1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44555: 79507-79694 , PASA_asmbl_44556: 85433-85953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_070 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
2 Hb_003077_130 0.0995166146 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
3 Hb_024714_080 0.104810541 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
4 Hb_000069_490 0.1142253092 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002276_070 0.1220782149 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
6 Hb_001437_120 0.1242681871 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
7 Hb_010757_030 0.1276208765 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000997_140 0.1285843513 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
9 Hb_028707_110 0.1296358863 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
10 Hb_002016_050 0.1321761709 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
11 Hb_002495_060 0.1371366733 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_007192_090 0.1371826381 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
13 Hb_008092_060 0.1384955203 - - -
14 Hb_000479_170 0.1402099654 - - chaperone clpb, putative [Ricinus communis]
15 Hb_003878_080 0.1455935621 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
16 Hb_002942_130 0.1461681095 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
17 Hb_000599_230 0.1516676643 - - -
18 Hb_002681_080 0.15189526 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
19 Hb_001832_040 0.1520401473 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000031_230 0.1521678806 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004785_070 Hb_004785_070 Hb_003077_130 Hb_003077_130 Hb_004785_070--Hb_003077_130 Hb_024714_080 Hb_024714_080 Hb_004785_070--Hb_024714_080 Hb_000069_490 Hb_000069_490 Hb_004785_070--Hb_000069_490 Hb_002276_070 Hb_002276_070 Hb_004785_070--Hb_002276_070 Hb_001437_120 Hb_001437_120 Hb_004785_070--Hb_001437_120 Hb_010757_030 Hb_010757_030 Hb_004785_070--Hb_010757_030 Hb_003077_130--Hb_024714_080 Hb_003077_130--Hb_000069_490 Hb_000997_140 Hb_000997_140 Hb_003077_130--Hb_000997_140 Hb_028707_110 Hb_028707_110 Hb_003077_130--Hb_028707_110 Hb_003077_130--Hb_010757_030 Hb_024714_080--Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_024714_080--Hb_003878_080 Hb_024714_080--Hb_028707_110 Hb_024714_080--Hb_000997_140 Hb_000069_490--Hb_003878_080 Hb_000069_490--Hb_028707_110 Hb_000069_490--Hb_010757_030 Hb_000069_490--Hb_000997_140 Hb_002276_070--Hb_001437_120 Hb_002495_060 Hb_002495_060 Hb_002276_070--Hb_002495_060 Hb_002368_070 Hb_002368_070 Hb_002276_070--Hb_002368_070 Hb_002276_070--Hb_028707_110 Hb_010488_010 Hb_010488_010 Hb_002276_070--Hb_010488_010 Hb_001437_120--Hb_028707_110 Hb_001408_030 Hb_001408_030 Hb_001437_120--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_001437_120--Hb_008092_060 Hb_001437_120--Hb_000997_140 Hb_003929_220 Hb_003929_220 Hb_001437_120--Hb_003929_220 Hb_010757_030--Hb_003878_080 Hb_010757_030--Hb_028707_110 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140 Hb_016760_010 Hb_016760_010 Hb_010757_030--Hb_016760_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73968 2.88556 1.66548 1.70636 2.12988 1.66672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05588 0.415288 0.534817 1.36929 10.3791

CAGE analysis