Hb_024714_080

Information

Type -
Description -
Location Contig24714: 59295-63194
Sequence    

Annotation

kegg
ID cit:102619896
description translocase of chloroplast 159, chloroplastic-like
nr
ID XP_012082732.1
description PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
swissprot
ID O81283
description Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1
trembl
ID A0A067K8L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13910 PE=4 SV=1
Gene Ontology
ID GO:0005525
description translocase of chloroplast chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_080 0.0 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
2 Hb_003077_130 0.0663617748 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
3 Hb_000069_490 0.0767989759 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004785_070 0.104810541 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
5 Hb_003878_080 0.109377363 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
6 Hb_028707_110 0.1149796744 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
7 Hb_000997_140 0.1154008156 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
8 Hb_010757_030 0.1249529642 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000934_020 0.128085032 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
10 Hb_008092_080 0.1306472315 - - elongation factor ts, putative [Ricinus communis]
11 Hb_002681_080 0.1330147005 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
12 Hb_000053_120 0.1348171165 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
13 Hb_078477_060 0.135285071 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
14 Hb_166127_030 0.1354648189 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_003427_080 0.1388066002 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
16 Hb_090530_010 0.1417419129 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_002740_190 0.1432940472 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
18 Hb_000189_250 0.1451846941 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
19 Hb_003029_140 0.1530363788 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
20 Hb_002671_130 0.1535174486 - - GTP-binding protein typa/bipa, putative [Ricinus communis]

Gene co-expression network

sample Hb_024714_080 Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_024714_080--Hb_003077_130 Hb_000069_490 Hb_000069_490 Hb_024714_080--Hb_000069_490 Hb_004785_070 Hb_004785_070 Hb_024714_080--Hb_004785_070 Hb_003878_080 Hb_003878_080 Hb_024714_080--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_024714_080--Hb_028707_110 Hb_000997_140 Hb_000997_140 Hb_024714_080--Hb_000997_140 Hb_003077_130--Hb_000069_490 Hb_003077_130--Hb_000997_140 Hb_003077_130--Hb_004785_070 Hb_003077_130--Hb_028707_110 Hb_010757_030 Hb_010757_030 Hb_003077_130--Hb_010757_030 Hb_000069_490--Hb_003878_080 Hb_000069_490--Hb_028707_110 Hb_000069_490--Hb_010757_030 Hb_000069_490--Hb_000997_140 Hb_004785_070--Hb_000069_490 Hb_002276_070 Hb_002276_070 Hb_004785_070--Hb_002276_070 Hb_001437_120 Hb_001437_120 Hb_004785_070--Hb_001437_120 Hb_004785_070--Hb_010757_030 Hb_003878_080--Hb_010757_030 Hb_000676_200 Hb_000676_200 Hb_003878_080--Hb_000676_200 Hb_000934_020 Hb_000934_020 Hb_003878_080--Hb_000934_020 Hb_002282_070 Hb_002282_070 Hb_003878_080--Hb_002282_070 Hb_028707_110--Hb_001437_120 Hb_028707_110--Hb_000997_140 Hb_028707_110--Hb_010757_030 Hb_003929_220 Hb_003929_220 Hb_028707_110--Hb_003929_220 Hb_003029_140 Hb_003029_140 Hb_000997_140--Hb_003029_140 Hb_000997_140--Hb_003929_220 Hb_018043_020 Hb_018043_020 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.1694 13.9913 12.8525 8.0218 8.66098 11.6305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.76882 3.00931 6.65875 10.3237 81.4845

CAGE analysis