Hb_018043_020

Information

Type -
Description -
Location Contig18043: 12371-26589
Sequence    

Annotation

kegg
ID rcu:RCOM_0200480
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012084399.1
description PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
swissprot
ID Q0WLC6
description Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana GN=MRL1 PE=2 SV=2
trembl
ID A0A067JUM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19607 PE=4 SV=1
Gene Ontology
ID GO:0009657
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17469: 12330-26631 , PASA_asmbl_17470: 13335-13527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018043_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
2 Hb_003029_140 0.0640337029 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
3 Hb_159809_090 0.0640517181 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
4 Hb_001250_020 0.0687169959 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
5 Hb_008616_040 0.0713503786 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
6 Hb_001425_010 0.0739736219 - - sugar transporter, putative [Ricinus communis]
7 Hb_004629_030 0.0883701579 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_010984_010 0.0939392183 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001890_010 0.0963695058 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_021409_190 0.0965310768 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
11 Hb_000997_140 0.0987449022 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
12 Hb_014361_110 0.0999952862 - - RNA binding protein, putative [Ricinus communis]
13 Hb_000579_040 0.1001461515 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
14 Hb_025194_090 0.101323056 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
15 Hb_002928_030 0.102321128 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
16 Hb_004041_030 0.1032190448 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
17 Hb_007576_180 0.10385253 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
18 Hb_000640_260 0.1046425802 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
19 Hb_001109_160 0.104668351 - - DNA binding protein, putative [Ricinus communis]
20 Hb_052946_010 0.1056567393 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]

Gene co-expression network

sample Hb_018043_020 Hb_018043_020 Hb_003029_140 Hb_003029_140 Hb_018043_020--Hb_003029_140 Hb_159809_090 Hb_159809_090 Hb_018043_020--Hb_159809_090 Hb_001250_020 Hb_001250_020 Hb_018043_020--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_018043_020--Hb_008616_040 Hb_001425_010 Hb_001425_010 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_003029_140--Hb_001250_020 Hb_003029_140--Hb_008616_040 Hb_021409_190 Hb_021409_190 Hb_003029_140--Hb_021409_190 Hb_000997_140 Hb_000997_140 Hb_003029_140--Hb_000997_140 Hb_052946_010 Hb_052946_010 Hb_003029_140--Hb_052946_010 Hb_159809_090--Hb_001425_010 Hb_159809_090--Hb_003029_140 Hb_159809_090--Hb_008616_040 Hb_159809_090--Hb_052946_010 Hb_007576_180 Hb_007576_180 Hb_159809_090--Hb_007576_180 Hb_001250_020--Hb_008616_040 Hb_001109_160 Hb_001109_160 Hb_001250_020--Hb_001109_160 Hb_000762_110 Hb_000762_110 Hb_001250_020--Hb_000762_110 Hb_010984_010 Hb_010984_010 Hb_001250_020--Hb_010984_010 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_008616_040--Hb_021409_190 Hb_008616_040--Hb_010984_010 Hb_001425_010--Hb_008616_040 Hb_000510_190 Hb_000510_190 Hb_001425_010--Hb_000510_190 Hb_003549_050 Hb_003549_050 Hb_001425_010--Hb_003549_050 Hb_001425_010--Hb_003029_140 Hb_000482_050 Hb_000482_050 Hb_004629_030--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_004629_030--Hb_068804_090 Hb_000748_090 Hb_000748_090 Hb_004629_030--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_004629_030--Hb_007012_030 Hb_000358_040 Hb_000358_040 Hb_004629_030--Hb_000358_040 Hb_000617_250 Hb_000617_250 Hb_004629_030--Hb_000617_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34296 7.52043 11.4799 6.29592 2.91125 3.12537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33631 2.60394 2.51649 6.54089 25.7597

CAGE analysis