Hb_000762_110

Information

Type -
Description -
Location Contig762: 98432-108941
Sequence    

Annotation

kegg
ID vvi:100241896
description protease Do-like 1, chloroplastic
nr
ID XP_012081536.1
description PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
swissprot
ID O22609
description Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2
trembl
ID A0A067LA60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09590 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protease do-like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57302: 98852-103257 , PASA_asmbl_57304: 102017-102401 , PASA_asmbl_57305: 99453-99828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000762_110 0.0 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
2 Hb_005914_210 0.0875832219 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
3 Hb_000376_210 0.091063631 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
4 Hb_001250_020 0.0964293423 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
5 Hb_002928_030 0.1003346227 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
6 Hb_000120_860 0.1014891287 - - nucellin, putative [Ricinus communis]
7 Hb_000579_040 0.1030844482 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
8 Hb_006916_030 0.1032780541 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
9 Hb_001009_260 0.1042860674 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
10 Hb_000000_310 0.1046417499 - - metalloendopeptidase, putative [Ricinus communis]
11 Hb_001109_160 0.1082820135 - - DNA binding protein, putative [Ricinus communis]
12 Hb_018043_020 0.1120254391 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
13 Hb_004629_030 0.1126091396 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_006916_050 0.1138585538 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
15 Hb_002399_020 0.1139495314 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
16 Hb_008616_040 0.1141655183 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
17 Hb_000537_070 0.116378531 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
18 Hb_004994_350 0.1164065407 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
19 Hb_001221_300 0.116483378 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
20 Hb_012799_190 0.1167644693 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]

Gene co-expression network

sample Hb_000762_110 Hb_000762_110 Hb_005914_210 Hb_005914_210 Hb_000762_110--Hb_005914_210 Hb_000376_210 Hb_000376_210 Hb_000762_110--Hb_000376_210 Hb_001250_020 Hb_001250_020 Hb_000762_110--Hb_001250_020 Hb_002928_030 Hb_002928_030 Hb_000762_110--Hb_002928_030 Hb_000120_860 Hb_000120_860 Hb_000762_110--Hb_000120_860 Hb_000579_040 Hb_000579_040 Hb_000762_110--Hb_000579_040 Hb_163145_030 Hb_163145_030 Hb_005914_210--Hb_163145_030 Hb_001109_160 Hb_001109_160 Hb_005914_210--Hb_001109_160 Hb_005914_210--Hb_001250_020 Hb_021409_190 Hb_021409_190 Hb_005914_210--Hb_021409_190 Hb_001009_260 Hb_001009_260 Hb_005914_210--Hb_001009_260 Hb_006916_050 Hb_006916_050 Hb_000376_210--Hb_006916_050 Hb_000617_250 Hb_000617_250 Hb_000376_210--Hb_000617_250 Hb_021079_020 Hb_021079_020 Hb_000376_210--Hb_021079_020 Hb_004629_030 Hb_004629_030 Hb_000376_210--Hb_004629_030 Hb_068804_090 Hb_068804_090 Hb_000376_210--Hb_068804_090 Hb_018043_020 Hb_018043_020 Hb_001250_020--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001250_020--Hb_008616_040 Hb_003029_140 Hb_003029_140 Hb_001250_020--Hb_003029_140 Hb_001250_020--Hb_001109_160 Hb_010984_010 Hb_010984_010 Hb_001250_020--Hb_010984_010 Hb_001649_030 Hb_001649_030 Hb_002928_030--Hb_001649_030 Hb_000358_040 Hb_000358_040 Hb_002928_030--Hb_000358_040 Hb_002928_030--Hb_004629_030 Hb_003376_390 Hb_003376_390 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_000120_860--Hb_001009_260 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_030959_010 Hb_030959_010 Hb_000120_860--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_000120_860--Hb_005116_140 Hb_003682_070 Hb_003682_070 Hb_000120_860--Hb_003682_070 Hb_032631_070 Hb_032631_070 Hb_000579_040--Hb_032631_070 Hb_000579_040--Hb_025194_090 Hb_002075_030 Hb_002075_030 Hb_000579_040--Hb_002075_030 Hb_138585_030 Hb_138585_030 Hb_000579_040--Hb_138585_030 Hb_001307_100 Hb_001307_100 Hb_000579_040--Hb_001307_100 Hb_001143_100 Hb_001143_100 Hb_000579_040--Hb_001143_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52675 10.4927 15.134 13.7283 5.28458 3.60666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4256 2.4568 4.28273 5.02952 29.9777

CAGE analysis