Hb_005116_140

Information

Type -
Description -
Location Contig5116: 143694-147259
Sequence    

Annotation

kegg
ID rcu:RCOM_0557810
description leucine rich repeat-containing protein, putative
nr
ID XP_012092245.1
description PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
swissprot
ID Q9LE82
description RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1
trembl
ID A0A067JN61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21931 PE=4 SV=1
Gene Ontology
ID GO:0005886
description ran gtpase-activating protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46355: 143709-146918 , PASA_asmbl_46356: 145991-146216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_140 0.0 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
2 Hb_030959_010 0.0762174917 - - cullin, putative [Ricinus communis]
3 Hb_002805_090 0.0784809114 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_000120_860 0.0884392492 - - nucellin, putative [Ricinus communis]
5 Hb_009674_050 0.0966099473 - - Endosomal P24A protein precursor, putative [Ricinus communis]
6 Hb_002311_130 0.1017633447 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
7 Hb_000025_500 0.1026025857 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_001998_220 0.106711351 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
9 Hb_003006_080 0.1067595451 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
10 Hb_002400_060 0.1090587783 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
11 Hb_001473_170 0.1119822803 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
12 Hb_000270_660 0.1133348344 - - purine permease, putative [Ricinus communis]
13 Hb_007313_040 0.1154109237 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
14 Hb_000684_310 0.117042364 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
15 Hb_003894_010 0.1184133987 - - unnamed protein product [Vitis vinifera]
16 Hb_030312_030 0.1266225439 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
17 Hb_011364_020 0.1276307 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
18 Hb_005914_040 0.1286591068 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
19 Hb_000066_040 0.1287152577 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
20 Hb_001195_370 0.1291259348 - - -

Gene co-expression network

sample Hb_005116_140 Hb_005116_140 Hb_030959_010 Hb_030959_010 Hb_005116_140--Hb_030959_010 Hb_002805_090 Hb_002805_090 Hb_005116_140--Hb_002805_090 Hb_000120_860 Hb_000120_860 Hb_005116_140--Hb_000120_860 Hb_009674_050 Hb_009674_050 Hb_005116_140--Hb_009674_050 Hb_002311_130 Hb_002311_130 Hb_005116_140--Hb_002311_130 Hb_000025_500 Hb_000025_500 Hb_005116_140--Hb_000025_500 Hb_030959_010--Hb_000120_860 Hb_009252_010 Hb_009252_010 Hb_030959_010--Hb_009252_010 Hb_030959_010--Hb_009674_050 Hb_000417_170 Hb_000417_170 Hb_030959_010--Hb_000417_170 Hb_002611_010 Hb_002611_010 Hb_030959_010--Hb_002611_010 Hb_002805_090--Hb_002311_130 Hb_000066_040 Hb_000066_040 Hb_002805_090--Hb_000066_040 Hb_001998_220 Hb_001998_220 Hb_002805_090--Hb_001998_220 Hb_002805_090--Hb_000025_500 Hb_011174_080 Hb_011174_080 Hb_002805_090--Hb_011174_080 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_001009_260 Hb_001009_260 Hb_000120_860--Hb_001009_260 Hb_000000_310 Hb_000000_310 Hb_000120_860--Hb_000000_310 Hb_003682_070 Hb_003682_070 Hb_000120_860--Hb_003682_070 Hb_003746_010 Hb_003746_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_005348_110 Hb_005348_110 Hb_009674_050--Hb_005348_110 Hb_009674_050--Hb_009252_010 Hb_002311_130--Hb_002400_060 Hb_007313_040 Hb_007313_040 Hb_002311_130--Hb_007313_040 Hb_002311_130--Hb_001998_220 Hb_001473_170 Hb_001473_170 Hb_002311_130--Hb_001473_170 Hb_005000_090 Hb_005000_090 Hb_002311_130--Hb_005000_090 Hb_000167_120 Hb_000167_120 Hb_000025_500--Hb_000167_120 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_004041_030 Hb_004041_030 Hb_000025_500--Hb_004041_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26929 7.36562 5.06348 15.8714 3.21464 3.91575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64225 1.85379 2.46551 7.66309 20.5906

CAGE analysis