Hb_009674_050

Information

Type -
Description -
Location Contig9674: 93057-95030
Sequence    

Annotation

kegg
ID rcu:RCOM_0701700
description Endosomal P24A protein precursor, putative
nr
ID XP_002523542.1
description Endosomal P24A protein precursor, putative [Ricinus communis]
swissprot
ID Q9FYQ8
description Transmembrane 9 superfamily member 11 OS=Arabidopsis thaliana GN=TMN11 PE=2 SV=1
trembl
ID B9SC23
description Endosomal P24A protein, putative OS=Ricinus communis GN=RCOM_0701700 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63910: 92676-95242 , PASA_asmbl_63911: 92676-95242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009674_050 0.0 - - Endosomal P24A protein precursor, putative [Ricinus communis]
2 Hb_003746_010 0.076858664 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002400_060 0.0823921067 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
4 Hb_005348_110 0.0913288555 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_009252_010 0.0928322851 - - PREDICTED: kinesin light chain [Jatropha curcas]
6 Hb_030959_010 0.0942229846 - - cullin, putative [Ricinus communis]
7 Hb_005116_140 0.0966099473 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
8 Hb_000120_860 0.09667464 - - nucellin, putative [Ricinus communis]
9 Hb_001210_040 0.1035849585 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
10 Hb_002611_010 0.1046362967 - - amino acid transporter, putative [Ricinus communis]
11 Hb_001882_020 0.1078558459 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
12 Hb_000011_220 0.1094328667 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
13 Hb_000270_660 0.1103228684 - - purine permease, putative [Ricinus communis]
14 Hb_001029_040 0.1105203428 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
15 Hb_002311_130 0.1123594969 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
16 Hb_001801_020 0.1132735636 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
17 Hb_000920_310 0.1134092541 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_000684_390 0.1165770299 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
19 Hb_001216_110 0.1172581883 - - PREDICTED: protein GPR107-like [Jatropha curcas]
20 Hb_000417_390 0.118437194 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]

Gene co-expression network

sample Hb_009674_050 Hb_009674_050 Hb_003746_010 Hb_003746_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_005348_110 Hb_005348_110 Hb_009674_050--Hb_005348_110 Hb_009252_010 Hb_009252_010 Hb_009674_050--Hb_009252_010 Hb_030959_010 Hb_030959_010 Hb_009674_050--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_009674_050--Hb_005116_140 Hb_001029_040 Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_001882_020 Hb_001882_020 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_001801_020 Hb_001801_020 Hb_002400_060--Hb_001801_020 Hb_002311_130 Hb_002311_130 Hb_002400_060--Hb_002311_130 Hb_001210_040 Hb_001210_040 Hb_002400_060--Hb_001210_040 Hb_033642_060 Hb_033642_060 Hb_002400_060--Hb_033642_060 Hb_000265_140 Hb_000265_140 Hb_002400_060--Hb_000265_140 Hb_005348_110--Hb_003746_010 Hb_001216_110 Hb_001216_110 Hb_005348_110--Hb_001216_110 Hb_005348_110--Hb_009252_010 Hb_000011_220 Hb_000011_220 Hb_005348_110--Hb_000011_220 Hb_010175_030 Hb_010175_030 Hb_005348_110--Hb_010175_030 Hb_009252_010--Hb_030959_010 Hb_000120_860 Hb_000120_860 Hb_009252_010--Hb_000120_860 Hb_005228_040 Hb_005228_040 Hb_009252_010--Hb_005228_040 Hb_000684_390 Hb_000684_390 Hb_009252_010--Hb_000684_390 Hb_030959_010--Hb_005116_140 Hb_030959_010--Hb_000120_860 Hb_000417_170 Hb_000417_170 Hb_030959_010--Hb_000417_170 Hb_002611_010 Hb_002611_010 Hb_030959_010--Hb_002611_010 Hb_002805_090 Hb_002805_090 Hb_005116_140--Hb_002805_090 Hb_005116_140--Hb_000120_860 Hb_005116_140--Hb_002311_130 Hb_000025_500 Hb_000025_500 Hb_005116_140--Hb_000025_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84808 6.54537 5.71047 20.3009 3.8017 4.43261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88522 2.48637 6.42097 7.76395 21.6192

CAGE analysis