Hb_009252_030

Information

Type -
Description -
Location Contig9252: 39194-41933
Sequence    

Annotation

kegg
ID rcu:RCOM_1510780
description hypothetical protein
nr
ID XP_012080078.1
description PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
swissprot
ID D7MMW4
description CASP-like protein 4A2 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_919556 PE=3 SV=1
trembl
ID B9RB34
description CASP-like protein OS=Ricinus communis GN=RCOM_1510780 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein aralydraft_482607

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62618: 39739-41907 , PASA_asmbl_62619: 38925-41831
cDNA
(Sanger)
(ID:Location)		 001_N10.ab1: 40357-41907 , 025_K03.ab1: 40338-41907

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_030 0.0 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
2 Hb_001029_040 0.087916884 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
3 Hb_001754_020 0.0897475406 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
4 Hb_005977_100 0.0912600985 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
5 Hb_000265_140 0.092237566 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
6 Hb_001946_180 0.0937451876 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000058_110 0.0980537102 - - PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
8 Hb_000390_050 0.0981176128 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
9 Hb_003746_010 0.0984546283 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000701_030 0.0988314515 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
11 Hb_003975_010 0.0996030452 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
12 Hb_005192_010 0.1010069328 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
13 Hb_001481_150 0.102308167 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
14 Hb_000256_230 0.1040696984 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
15 Hb_021576_070 0.1072986831 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
16 Hb_007545_010 0.1080300012 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
17 Hb_012194_060 0.1083781448 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
18 Hb_003209_130 0.1087084571 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
19 Hb_001627_040 0.1104739074 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
20 Hb_003097_140 0.1120698114 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]

Gene co-expression network

sample Hb_009252_030 Hb_009252_030 Hb_001029_040 Hb_001029_040 Hb_009252_030--Hb_001029_040 Hb_001754_020 Hb_001754_020 Hb_009252_030--Hb_001754_020 Hb_005977_100 Hb_005977_100 Hb_009252_030--Hb_005977_100 Hb_000265_140 Hb_000265_140 Hb_009252_030--Hb_000265_140 Hb_001946_180 Hb_001946_180 Hb_009252_030--Hb_001946_180 Hb_000058_110 Hb_000058_110 Hb_009252_030--Hb_000058_110 Hb_001627_040 Hb_001627_040 Hb_001029_040--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_001029_040--Hb_007545_010 Hb_003746_010 Hb_003746_010 Hb_001029_040--Hb_003746_010 Hb_001157_230 Hb_001157_230 Hb_001029_040--Hb_001157_230 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080 Hb_022250_010 Hb_022250_010 Hb_001029_040--Hb_022250_010 Hb_003975_010 Hb_003975_010 Hb_001754_020--Hb_003975_010 Hb_021576_070 Hb_021576_070 Hb_001754_020--Hb_021576_070 Hb_001691_040 Hb_001691_040 Hb_001754_020--Hb_001691_040 Hb_010672_020 Hb_010672_020 Hb_001754_020--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_001754_020--Hb_002272_240 Hb_116349_120 Hb_116349_120 Hb_001754_020--Hb_116349_120 Hb_000049_020 Hb_000049_020 Hb_005977_100--Hb_000049_020 Hb_005977_100--Hb_007545_010 Hb_011310_110 Hb_011310_110 Hb_005977_100--Hb_011310_110 Hb_000212_420 Hb_000212_420 Hb_005977_100--Hb_000212_420 Hb_003209_130 Hb_003209_130 Hb_005977_100--Hb_003209_130 Hb_004102_170 Hb_004102_170 Hb_005977_100--Hb_004102_170 Hb_000701_030 Hb_000701_030 Hb_000265_140--Hb_000701_030 Hb_002603_040 Hb_002603_040 Hb_000265_140--Hb_002603_040 Hb_012194_060 Hb_012194_060 Hb_000265_140--Hb_012194_060 Hb_000085_260 Hb_000085_260 Hb_000265_140--Hb_000085_260 Hb_000265_140--Hb_001754_020 Hb_000265_140--Hb_021576_070 Hb_002289_060 Hb_002289_060 Hb_001946_180--Hb_002289_060 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_001842_010 Hb_001842_010 Hb_001946_180--Hb_001842_010 Hb_001946_180--Hb_000049_020 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_000058_110--Hb_002226_080 Hb_001440_020 Hb_001440_020 Hb_000058_110--Hb_001440_020 Hb_001491_030 Hb_001491_030 Hb_000058_110--Hb_001491_030 Hb_000058_110--Hb_005977_100 Hb_000359_190 Hb_000359_190 Hb_000058_110--Hb_000359_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25302 12.5485 9.18524 31.5012 8.94884 7.48602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.72798 5.61116 7.29524 9.69335 18.3435

CAGE analysis