Hb_002289_060

Information

Type -
Description -
Location Contig2289: 44790-50003
Sequence    

Annotation

kegg
ID rcu:RCOM_0373880
description hypothetical protein
nr
ID XP_002532077.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1F9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0373880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23850: 44983-45119 , PASA_asmbl_23851: 48996-50054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000062_540 0.0730800439 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001946_180 0.0768745967 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001157_230 0.0816049645 - - Protein AFR, putative [Ricinus communis]
5 Hb_001876_040 0.0817085527 - - PREDICTED: mucin-5B [Jatropha curcas]
6 Hb_001916_090 0.0849759506 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
7 Hb_034585_010 0.0890177981 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
8 Hb_000359_310 0.0892136949 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
9 Hb_001029_040 0.0920815463 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
10 Hb_000679_230 0.0922207458 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
11 Hb_000049_020 0.0924674266 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
12 Hb_043792_040 0.0939128627 - - hypothetical protein, partial [Rosa rugosa]
13 Hb_000256_150 0.0941696634 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
14 Hb_000291_150 0.0951203699 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
15 Hb_138585_080 0.0956250389 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
16 Hb_000300_270 0.0961665748 - - cationic amino acid transporter, putative [Ricinus communis]
17 Hb_005650_010 0.0971650202 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001440_020 0.0986443908 - - exocyst componenet sec8, putative [Ricinus communis]
19 Hb_009569_040 0.1004343259 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
20 Hb_002495_080 0.1006351848 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]

Gene co-expression network

sample Hb_002289_060 Hb_002289_060 Hb_000062_540 Hb_000062_540 Hb_002289_060--Hb_000062_540 Hb_001946_180 Hb_001946_180 Hb_002289_060--Hb_001946_180 Hb_001157_230 Hb_001157_230 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_001916_090 Hb_001916_090 Hb_002289_060--Hb_001916_090 Hb_034585_010 Hb_034585_010 Hb_002289_060--Hb_034585_010 Hb_043792_040 Hb_043792_040 Hb_000062_540--Hb_043792_040 Hb_001936_130 Hb_001936_130 Hb_000062_540--Hb_001936_130 Hb_000352_120 Hb_000352_120 Hb_000062_540--Hb_000352_120 Hb_004129_140 Hb_004129_140 Hb_000062_540--Hb_004129_140 Hb_019181_040 Hb_019181_040 Hb_000062_540--Hb_019181_040 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_001842_010 Hb_001842_010 Hb_001946_180--Hb_001842_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_001157_230--Hb_001876_040 Hb_000212_120 Hb_000212_120 Hb_001157_230--Hb_000212_120 Hb_022250_010 Hb_022250_010 Hb_001157_230--Hb_022250_010 Hb_032202_220 Hb_032202_220 Hb_001157_230--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_001876_040--Hb_022250_010 Hb_001876_040--Hb_000212_120 Hb_001876_040--Hb_032202_220 Hb_001876_040--Hb_024184_010 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080 Hb_000409_030 Hb_000409_030 Hb_001916_090--Hb_000409_030 Hb_000359_210 Hb_000359_210 Hb_001916_090--Hb_000359_210 Hb_000941_150 Hb_000941_150 Hb_001916_090--Hb_000941_150 Hb_007416_210 Hb_007416_210 Hb_001916_090--Hb_007416_210 Hb_003206_110 Hb_003206_110 Hb_001916_090--Hb_003206_110 Hb_000291_150 Hb_000291_150 Hb_034585_010--Hb_000291_150 Hb_000465_280 Hb_000465_280 Hb_034585_010--Hb_000465_280 Hb_001329_250 Hb_001329_250 Hb_034585_010--Hb_001329_250 Hb_001279_040 Hb_001279_040 Hb_034585_010--Hb_001279_040 Hb_034585_010--Hb_001029_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.25677 5.2929 5.6 14.3841 4.85568 6.63064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.48142 3.82324 7.42216 4.60452 12.351

CAGE analysis