Hb_001842_010

Information

Type -
Description -
Location Contig1842: 91121-94576
Sequence    

Annotation

kegg
ID rcu:RCOM_0792860
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_002529073.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q39183
description Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana GN=D6PKL2 PE=1 SV=1
trembl
ID B9SSV4
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_0792860 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase d6pkl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18040: 90132-91429 , PASA_asmbl_18041: 94102-94528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_010 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_001946_180 0.0820463184 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003052_180 0.0834767551 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
4 Hb_000679_230 0.0960140026 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
5 Hb_005218_020 0.0976963306 - - Uncharacterized protein isoform 3 [Theobroma cacao]
6 Hb_002804_040 0.1001144658 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
7 Hb_000853_200 0.1002704219 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
8 Hb_000477_100 0.1011046577 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
9 Hb_002150_040 0.1073070744 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
10 Hb_007416_210 0.1097138017 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
11 Hb_003998_040 0.1097599803 - - organic anion transporter, putative [Ricinus communis]
12 Hb_000258_240 0.1101346006 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
13 Hb_003529_030 0.1116185036 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
14 Hb_004046_030 0.1121355021 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
15 Hb_000023_300 0.1128193789 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
16 Hb_004055_120 0.1128962501 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
17 Hb_009569_040 0.1136659652 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
18 Hb_000256_150 0.1138905596 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
19 Hb_003097_140 0.1143570252 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
20 Hb_002289_060 0.1144560353 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001842_010 Hb_001842_010 Hb_001946_180 Hb_001946_180 Hb_001842_010--Hb_001946_180 Hb_003052_180 Hb_003052_180 Hb_001842_010--Hb_003052_180 Hb_000679_230 Hb_000679_230 Hb_001842_010--Hb_000679_230 Hb_005218_020 Hb_005218_020 Hb_001842_010--Hb_005218_020 Hb_002804_040 Hb_002804_040 Hb_001842_010--Hb_002804_040 Hb_000853_200 Hb_000853_200 Hb_001842_010--Hb_000853_200 Hb_002289_060 Hb_002289_060 Hb_001946_180--Hb_002289_060 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_033152_070 Hb_033152_070 Hb_003052_180--Hb_033152_070 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_004881_030 Hb_004881_030 Hb_003052_180--Hb_004881_030 Hb_003052_180--Hb_001946_180 Hb_003052_180--Hb_005218_020 Hb_007153_050 Hb_007153_050 Hb_000679_230--Hb_007153_050 Hb_000679_230--Hb_002289_060 Hb_000679_230--Hb_001946_180 Hb_000679_230--Hb_003052_180 Hb_003911_020 Hb_003911_020 Hb_000679_230--Hb_003911_020 Hb_000066_030 Hb_000066_030 Hb_005218_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_005218_020--Hb_003998_040 Hb_007765_040 Hb_007765_040 Hb_005218_020--Hb_007765_040 Hb_000917_130 Hb_000917_130 Hb_005218_020--Hb_000917_130 Hb_003529_030 Hb_003529_030 Hb_005218_020--Hb_003529_030 Hb_004055_120 Hb_004055_120 Hb_005218_020--Hb_004055_120 Hb_000297_120 Hb_000297_120 Hb_002804_040--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_002804_040--Hb_004046_030 Hb_000025_190 Hb_000025_190 Hb_002804_040--Hb_000025_190 Hb_000946_110 Hb_000946_110 Hb_002804_040--Hb_000946_110 Hb_003206_110 Hb_003206_110 Hb_002804_040--Hb_003206_110 Hb_000477_100 Hb_000477_100 Hb_000853_200--Hb_000477_100 Hb_000505_150 Hb_000505_150 Hb_000853_200--Hb_000505_150 Hb_008748_030 Hb_008748_030 Hb_000853_200--Hb_008748_030 Hb_000748_030 Hb_000748_030 Hb_000853_200--Hb_000748_030 Hb_000012_310 Hb_000012_310 Hb_000853_200--Hb_000012_310 Hb_007416_210 Hb_007416_210 Hb_000853_200--Hb_007416_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.86592 1.21793 1.35389 5.10863 0.941255 1.5685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63408 1.03103 2.12691 2.41245 2.59462

CAGE analysis