Hb_002804_040

Information

Type -
Description -
Location Contig2804: 56119-57429
Sequence    

Annotation

kegg
ID cit:102615849
description fasciclin-like arabinogalactan protein 4-like
nr
ID XP_012065029.1
description PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
swissprot
ID Q9SNC3
description Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1
trembl
ID A0A067L773
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05699 PE=4 SV=1
Gene Ontology
ID GO:0009897
description fasciclin-like arabinogalactan protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 017_K21.ab1: 57024-57557

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002804_040 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
2 Hb_000297_120 0.0811999129 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
3 Hb_004046_030 0.0972841082 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
4 Hb_000025_190 0.097894761 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
5 Hb_001842_010 0.1001144658 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_000946_110 0.1009944888 - - GTP cyclohydrolase I, putative [Ricinus communis]
7 Hb_003206_110 0.1011331447 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
8 Hb_000012_310 0.1026999664 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
9 Hb_000060_050 0.1053727669 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
10 Hb_062537_010 0.1057324809 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
11 Hb_000185_220 0.1072387397 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
12 Hb_003529_030 0.1076624777 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
13 Hb_000069_210 0.1088300409 - - PREDICTED: exportin-2 [Jatropha curcas]
14 Hb_006059_010 0.1091542662 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
15 Hb_012678_020 0.1097476445 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
16 Hb_003305_040 0.1102810045 - - AP47/50p mRNA family protein [Populus trichocarpa]
17 Hb_002660_170 0.1103584526 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
18 Hb_007416_090 0.1106787152 - - UDP-sugar transporter, putative [Ricinus communis]
19 Hb_066842_010 0.1107865202 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
20 Hb_007383_020 0.1109429596 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002804_040 Hb_002804_040 Hb_000297_120 Hb_000297_120 Hb_002804_040--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_002804_040--Hb_004046_030 Hb_000025_190 Hb_000025_190 Hb_002804_040--Hb_000025_190 Hb_001842_010 Hb_001842_010 Hb_002804_040--Hb_001842_010 Hb_000946_110 Hb_000946_110 Hb_002804_040--Hb_000946_110 Hb_003206_110 Hb_003206_110 Hb_002804_040--Hb_003206_110 Hb_032920_070 Hb_032920_070 Hb_000297_120--Hb_032920_070 Hb_000185_220 Hb_000185_220 Hb_000297_120--Hb_000185_220 Hb_006683_070 Hb_006683_070 Hb_000297_120--Hb_006683_070 Hb_001307_030 Hb_001307_030 Hb_000297_120--Hb_001307_030 Hb_006059_010 Hb_006059_010 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170 Hb_004046_030--Hb_003206_110 Hb_006277_010 Hb_006277_010 Hb_004046_030--Hb_006277_010 Hb_170138_010 Hb_170138_010 Hb_004046_030--Hb_170138_010 Hb_004046_030--Hb_000185_220 Hb_000800_090 Hb_000800_090 Hb_004046_030--Hb_000800_090 Hb_012678_020 Hb_012678_020 Hb_004046_030--Hb_012678_020 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_000025_190--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_005648_010 Hb_005648_010 Hb_000025_190--Hb_005648_010 Hb_003988_050 Hb_003988_050 Hb_000025_190--Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_000025_190--Hb_000115_150 Hb_001946_180 Hb_001946_180 Hb_001842_010--Hb_001946_180 Hb_003052_180 Hb_003052_180 Hb_001842_010--Hb_003052_180 Hb_000679_230 Hb_000679_230 Hb_001842_010--Hb_000679_230 Hb_005218_020 Hb_005218_020 Hb_001842_010--Hb_005218_020 Hb_000853_200 Hb_000853_200 Hb_001842_010--Hb_000853_200 Hb_000946_110--Hb_000297_120 Hb_000946_110--Hb_004046_030 Hb_002043_040 Hb_002043_040 Hb_000946_110--Hb_002043_040 Hb_000309_050 Hb_000309_050 Hb_000946_110--Hb_000309_050 Hb_000946_110--Hb_006277_010 Hb_003206_110--Hb_170138_010 Hb_003206_110--Hb_000185_220 Hb_001195_400 Hb_001195_400 Hb_003206_110--Hb_001195_400 Hb_000359_210 Hb_000359_210 Hb_003206_110--Hb_000359_210 Hb_003206_110--Hb_006277_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4692 6.62047 8.38249 29.7053 5.99626 8.01531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.214 13.7928 15.9441 20.6991 21.4491

CAGE analysis