Hb_000679_230

Information

Type -
Description -
Location Contig679: 148633-153069
Sequence    

Annotation

kegg
ID rcu:RCOM_0923990
description hypothetical protein
nr
ID XP_012076560.1
description PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
swissprot
ID Q84ZT9
description Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
trembl
ID A0A067KBR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07163 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53703: 148785-153208 , PASA_asmbl_53704: 148785-153163
cDNA
(Sanger)
(ID:Location)		 006_I21.ab1: 151555-153208 , 017_I18.ab1: 148891-150723 , 051_F02.ab1: 148873-150723 , 052_B22.ab1: 148868-150723

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_230 0.0 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
2 Hb_007153_050 0.0724304519 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
3 Hb_002289_060 0.0922207458 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001946_180 0.0923786003 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001842_010 0.0960140026 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_003052_180 0.1008607197 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
7 Hb_003911_020 0.1047292002 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
8 Hb_001916_090 0.1067793327 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
9 Hb_000359_310 0.1098909598 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
10 Hb_000062_540 0.1119035404 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004055_120 0.1148648175 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
12 Hb_005218_020 0.1151710813 - - Uncharacterized protein isoform 3 [Theobroma cacao]
13 Hb_003529_030 0.1157832373 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
14 Hb_000853_200 0.1192308626 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
15 Hb_002344_100 0.1197606992 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
16 Hb_000984_310 0.120370304 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
17 Hb_007416_210 0.1207785316 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
18 Hb_000477_100 0.1208420805 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
19 Hb_000917_130 0.1248041733 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
20 Hb_007765_040 0.1248541269 - - Cytosolic enolase isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_000679_230 Hb_000679_230 Hb_007153_050 Hb_007153_050 Hb_000679_230--Hb_007153_050 Hb_002289_060 Hb_002289_060 Hb_000679_230--Hb_002289_060 Hb_001946_180 Hb_001946_180 Hb_000679_230--Hb_001946_180 Hb_001842_010 Hb_001842_010 Hb_000679_230--Hb_001842_010 Hb_003052_180 Hb_003052_180 Hb_000679_230--Hb_003052_180 Hb_003911_020 Hb_003911_020 Hb_000679_230--Hb_003911_020 Hb_007153_050--Hb_001946_180 Hb_001018_110 Hb_001018_110 Hb_007153_050--Hb_001018_110 Hb_007153_050--Hb_002289_060 Hb_000409_030 Hb_000409_030 Hb_007153_050--Hb_000409_030 Hb_002631_070 Hb_002631_070 Hb_007153_050--Hb_002631_070 Hb_000062_540 Hb_000062_540 Hb_002289_060--Hb_000062_540 Hb_002289_060--Hb_001946_180 Hb_001157_230 Hb_001157_230 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_001916_090 Hb_001916_090 Hb_002289_060--Hb_001916_090 Hb_034585_010 Hb_034585_010 Hb_002289_060--Hb_034585_010 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_001946_180--Hb_001842_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_001842_010--Hb_003052_180 Hb_005218_020 Hb_005218_020 Hb_001842_010--Hb_005218_020 Hb_002804_040 Hb_002804_040 Hb_001842_010--Hb_002804_040 Hb_000853_200 Hb_000853_200 Hb_001842_010--Hb_000853_200 Hb_033152_070 Hb_033152_070 Hb_003052_180--Hb_033152_070 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_004881_030 Hb_004881_030 Hb_003052_180--Hb_004881_030 Hb_003052_180--Hb_001946_180 Hb_003052_180--Hb_005218_020 Hb_001609_040 Hb_001609_040 Hb_003911_020--Hb_001609_040 Hb_003911_020--Hb_003052_180 Hb_002325_070 Hb_002325_070 Hb_003911_020--Hb_002325_070 Hb_113818_010 Hb_113818_010 Hb_003911_020--Hb_113818_010 Hb_000107_110 Hb_000107_110 Hb_003911_020--Hb_000107_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.6419 28.4163 21.9155 92.7574 15.7981 41.8023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.0748 18.5133 46.2773 28.1248 51.2836

CAGE analysis