Hb_113818_010

Information

Type -
Description -
Location Contig113818: 25220-26755
Sequence    

Annotation

kegg
ID rcu:RCOM_0369980
description Xyloglucan galactosyltransferase KATAMARI1, putative
nr
ID XP_002532518.1
description Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
swissprot
ID Q7XJ98
description Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1
trembl
ID B9T2P9
description Xyloglucan galactosyltransferase KATAMARI1, putative OS=Ricinus communis GN=RCOM_0369980 PE=4 SV=1
Gene Ontology
ID GO:0005618
description exostosin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04149: 25267-26842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113818_010 0.0 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
2 Hb_000189_480 0.0871936732 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
3 Hb_015934_120 0.1004853016 - - PREDICTED: callose synthase 7 [Vitis vinifera]
4 Hb_001504_030 0.1105869005 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
5 Hb_002289_060 0.1215454706 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000244_180 0.1226098622 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009661_030 0.1229414946 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
8 Hb_000240_030 0.1255011463 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003911_020 0.1272911567 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
10 Hb_001314_080 0.1297015639 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
11 Hb_000359_310 0.1304773183 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
12 Hb_000172_440 0.1309068415 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
13 Hb_001226_140 0.1364868429 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
14 Hb_000327_110 0.1370644393 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
15 Hb_007477_050 0.1370739019 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
16 Hb_000140_340 0.1371537578 - - PREDICTED: protein ABIL1 [Jatropha curcas]
17 Hb_004116_020 0.1374782764 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
18 Hb_000371_100 0.1386163712 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
19 Hb_003935_060 0.1386804403 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
20 Hb_011606_020 0.1391285713 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]

Gene co-expression network

sample Hb_113818_010 Hb_113818_010 Hb_000189_480 Hb_000189_480 Hb_113818_010--Hb_000189_480 Hb_015934_120 Hb_015934_120 Hb_113818_010--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_113818_010--Hb_001504_030 Hb_002289_060 Hb_002289_060 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_009661_030 Hb_009661_030 Hb_113818_010--Hb_009661_030 Hb_000189_480--Hb_001504_030 Hb_000320_340 Hb_000320_340 Hb_000189_480--Hb_000320_340 Hb_000140_340 Hb_000140_340 Hb_000189_480--Hb_000140_340 Hb_001157_230 Hb_001157_230 Hb_000189_480--Hb_001157_230 Hb_007477_050 Hb_007477_050 Hb_000189_480--Hb_007477_050 Hb_006683_070 Hb_006683_070 Hb_015934_120--Hb_006683_070 Hb_001314_080 Hb_001314_080 Hb_015934_120--Hb_001314_080 Hb_185255_010 Hb_185255_010 Hb_015934_120--Hb_185255_010 Hb_005144_050 Hb_005144_050 Hb_015934_120--Hb_005144_050 Hb_005800_030 Hb_005800_030 Hb_015934_120--Hb_005800_030 Hb_000172_440 Hb_000172_440 Hb_015934_120--Hb_000172_440 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_133702_010 Hb_133702_010 Hb_001504_030--Hb_133702_010 Hb_001504_030--Hb_001314_080 Hb_000721_030 Hb_000721_030 Hb_001504_030--Hb_000721_030 Hb_001102_020 Hb_001102_020 Hb_001504_030--Hb_001102_020 Hb_000062_540 Hb_000062_540 Hb_002289_060--Hb_000062_540 Hb_001946_180 Hb_001946_180 Hb_002289_060--Hb_001946_180 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_001916_090 Hb_001916_090 Hb_002289_060--Hb_001916_090 Hb_034585_010 Hb_034585_010 Hb_002289_060--Hb_034585_010 Hb_012573_050 Hb_012573_050 Hb_000244_180--Hb_012573_050 Hb_004754_050 Hb_004754_050 Hb_000244_180--Hb_004754_050 Hb_171215_010 Hb_171215_010 Hb_000244_180--Hb_171215_010 Hb_007975_060 Hb_007975_060 Hb_000244_180--Hb_007975_060 Hb_000244_180--Hb_000721_030 Hb_000244_180--Hb_001876_040 Hb_000359_310 Hb_000359_310 Hb_009661_030--Hb_000359_310 Hb_009661_030--Hb_005800_030 Hb_001104_130 Hb_001104_130 Hb_009661_030--Hb_001104_130 Hb_004129_140 Hb_004129_140 Hb_009661_030--Hb_004129_140 Hb_003878_200 Hb_003878_200 Hb_009661_030--Hb_003878_200 Hb_019181_030 Hb_019181_030 Hb_009661_030--Hb_019181_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.03594 3.41377 5.62882 15.6643 2.30272 5.66079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.35138 6.14446 6.29431 2.79529 14.8698

CAGE analysis