Hb_009661_030

Information

Type -
Description -
Location Contig9661: 24854-34621
Sequence    

Annotation

kegg
ID rcu:RCOM_1550070
description hypothetical protein
nr
ID XP_012086384.1
description PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
swissprot
ID Q55B06
description SPX and EXS domain-containing protein 1 OS=Dictyostelium discoideum GN=DDB_G0271664 PE=3 SV=2
trembl
ID A0A067LMT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17316 PE=4 SV=1
Gene Ontology
ID GO:0016021
description spx and exs domain-containing protein 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63898: 24955-25191 , PASA_asmbl_63899: 26124-26403 , PASA_asmbl_63900: 28052-28458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009661_030 0.0 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
2 Hb_000359_310 0.0913042417 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
3 Hb_005800_030 0.0967932952 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
4 Hb_001104_130 0.0980029953 - - C-14 sterol reductase, putative [Ricinus communis]
5 Hb_004129_140 0.1008131877 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
6 Hb_003878_200 0.1013772248 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
7 Hb_019181_030 0.1027330244 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
8 Hb_000256_150 0.1041423214 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
9 Hb_000240_030 0.1048988461 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000172_440 0.1052202821 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
11 Hb_004055_120 0.1055479465 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
12 Hb_008406_180 0.106408664 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
13 Hb_002603_050 0.1081440064 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
14 Hb_003462_110 0.1081785664 - - hevamine-A precursor, putative [Ricinus communis]
15 Hb_003529_030 0.1081958631 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
16 Hb_185255_010 0.1092862899 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
17 Hb_004881_030 0.1097275766 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
18 Hb_003998_040 0.1108259132 - - organic anion transporter, putative [Ricinus communis]
19 Hb_005993_010 0.1111184754 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
20 Hb_000399_060 0.1114796345 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]

Gene co-expression network

sample Hb_009661_030 Hb_009661_030 Hb_000359_310 Hb_000359_310 Hb_009661_030--Hb_000359_310 Hb_005800_030 Hb_005800_030 Hb_009661_030--Hb_005800_030 Hb_001104_130 Hb_001104_130 Hb_009661_030--Hb_001104_130 Hb_004129_140 Hb_004129_140 Hb_009661_030--Hb_004129_140 Hb_003878_200 Hb_003878_200 Hb_009661_030--Hb_003878_200 Hb_019181_030 Hb_019181_030 Hb_009661_030--Hb_019181_030 Hb_000370_020 Hb_000370_020 Hb_000359_310--Hb_000370_020 Hb_002289_060 Hb_002289_060 Hb_000359_310--Hb_002289_060 Hb_001946_180 Hb_001946_180 Hb_000359_310--Hb_001946_180 Hb_000062_540 Hb_000062_540 Hb_000359_310--Hb_000062_540 Hb_000256_150 Hb_000256_150 Hb_000359_310--Hb_000256_150 Hb_133702_010 Hb_133702_010 Hb_005800_030--Hb_133702_010 Hb_004545_110 Hb_004545_110 Hb_005800_030--Hb_004545_110 Hb_002820_020 Hb_002820_020 Hb_005800_030--Hb_002820_020 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_004452_120 Hb_004452_120 Hb_005800_030--Hb_004452_120 Hb_000061_180 Hb_000061_180 Hb_005800_030--Hb_000061_180 Hb_004881_030 Hb_004881_030 Hb_001104_130--Hb_004881_030 Hb_000107_110 Hb_000107_110 Hb_001104_130--Hb_000107_110 Hb_002226_080 Hb_002226_080 Hb_001104_130--Hb_002226_080 Hb_000014_040 Hb_000014_040 Hb_001104_130--Hb_000014_040 Hb_000004_020 Hb_000004_020 Hb_001104_130--Hb_000004_020 Hb_002304_040 Hb_002304_040 Hb_004129_140--Hb_002304_040 Hb_003529_030 Hb_003529_030 Hb_004129_140--Hb_003529_030 Hb_004129_140--Hb_000062_540 Hb_000300_630 Hb_000300_630 Hb_004129_140--Hb_000300_630 Hb_005504_050 Hb_005504_050 Hb_004129_140--Hb_005504_050 Hb_000389_030 Hb_000389_030 Hb_003878_200--Hb_000389_030 Hb_004126_040 Hb_004126_040 Hb_003878_200--Hb_004126_040 Hb_000665_170 Hb_000665_170 Hb_003878_200--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_003878_200--Hb_000256_230 Hb_002928_090 Hb_002928_090 Hb_003878_200--Hb_002928_090 Hb_003998_040 Hb_003998_040 Hb_003878_200--Hb_003998_040 Hb_013394_050 Hb_013394_050 Hb_019181_030--Hb_013394_050 Hb_000152_600 Hb_000152_600 Hb_019181_030--Hb_000152_600 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_001609_040 Hb_001609_040 Hb_019181_030--Hb_001609_040 Hb_000197_020 Hb_000197_020 Hb_019181_030--Hb_000197_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18558 1.7902 4.24647 11.9589 3.21263 3.82917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.99808 4.57358 3.36148 3.19909 6.88006

CAGE analysis