Hb_001104_130

Information

Type -
Description -
Location Contig1104: 135971-147125
Sequence    

Annotation

kegg
ID rcu:RCOM_0382260
description C-14 sterol reductase, putative (EC:1.3.1.70)
nr
ID XP_002528583.1
description C-14 sterol reductase, putative [Ricinus communis]
swissprot
ID Q9LDR4
description Delta(14)-sterol reductase OS=Arabidopsis thaliana GN=FK PE=1 SV=2
trembl
ID B9SRG4
description C-14 sterol reductase, putative OS=Ricinus communis GN=RCOM_0382260 PE=4 SV=1
Gene Ontology
ID GO:0016020
description delta -sterol reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03245: 136100-136236 , PASA_asmbl_03246: 138818-139177 , PASA_asmbl_03247: 142245-142386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_130 0.0 - - C-14 sterol reductase, putative [Ricinus communis]
2 Hb_004881_030 0.0736969454 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
3 Hb_000107_110 0.091115786 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_002226_080 0.0915550673 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
5 Hb_009661_030 0.0980029953 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
6 Hb_000014_040 0.1005033722 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000004_020 0.1020576173 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002603_050 0.1034630447 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
9 Hb_007477_050 0.1049898832 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
10 Hb_002928_090 0.1050019739 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
11 Hb_003052_180 0.105611205 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
12 Hb_002902_130 0.1108737576 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
13 Hb_003878_200 0.113384676 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
14 Hb_033152_070 0.1170518839 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
15 Hb_010042_020 0.1173453966 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
16 Hb_000390_050 0.1178587237 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
17 Hb_001946_180 0.1179497308 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000684_210 0.1188749638 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
19 Hb_008406_180 0.1189086786 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
20 Hb_000399_060 0.120103247 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]

Gene co-expression network

sample Hb_001104_130 Hb_001104_130 Hb_004881_030 Hb_004881_030 Hb_001104_130--Hb_004881_030 Hb_000107_110 Hb_000107_110 Hb_001104_130--Hb_000107_110 Hb_002226_080 Hb_002226_080 Hb_001104_130--Hb_002226_080 Hb_009661_030 Hb_009661_030 Hb_001104_130--Hb_009661_030 Hb_000014_040 Hb_000014_040 Hb_001104_130--Hb_000014_040 Hb_000004_020 Hb_000004_020 Hb_001104_130--Hb_000004_020 Hb_004881_030--Hb_000107_110 Hb_002603_050 Hb_002603_050 Hb_004881_030--Hb_002603_050 Hb_003052_180 Hb_003052_180 Hb_004881_030--Hb_003052_180 Hb_033152_070 Hb_033152_070 Hb_004881_030--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_004881_030--Hb_000928_190 Hb_001894_070 Hb_001894_070 Hb_000107_110--Hb_001894_070 Hb_010042_020 Hb_010042_020 Hb_000107_110--Hb_010042_020 Hb_000107_110--Hb_033152_070 Hb_000107_110--Hb_003052_180 Hb_000056_130 Hb_000056_130 Hb_002226_080--Hb_000056_130 Hb_002226_080--Hb_000004_020 Hb_009569_040 Hb_009569_040 Hb_002226_080--Hb_009569_040 Hb_000058_110 Hb_000058_110 Hb_002226_080--Hb_000058_110 Hb_002928_090 Hb_002928_090 Hb_002226_080--Hb_002928_090 Hb_001946_180 Hb_001946_180 Hb_002226_080--Hb_001946_180 Hb_000359_310 Hb_000359_310 Hb_009661_030--Hb_000359_310 Hb_005800_030 Hb_005800_030 Hb_009661_030--Hb_005800_030 Hb_004129_140 Hb_004129_140 Hb_009661_030--Hb_004129_140 Hb_003878_200 Hb_003878_200 Hb_009661_030--Hb_003878_200 Hb_019181_030 Hb_019181_030 Hb_009661_030--Hb_019181_030 Hb_000014_040--Hb_002928_090 Hb_001051_050 Hb_001051_050 Hb_000014_040--Hb_001051_050 Hb_000390_050 Hb_000390_050 Hb_000014_040--Hb_000390_050 Hb_170138_010 Hb_170138_010 Hb_000014_040--Hb_170138_010 Hb_000399_060 Hb_000399_060 Hb_000014_040--Hb_000399_060 Hb_000684_210 Hb_000684_210 Hb_000014_040--Hb_000684_210 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000004_020--Hb_000056_130 Hb_000004_020--Hb_009569_040 Hb_004157_100 Hb_004157_100 Hb_000004_020--Hb_004157_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157409 0.144854 0.198444 0.822446 0.179711 0.267619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.254062 0.233151 0.12369 0.293736 0.550327

CAGE analysis