Hb_012340_070

Information

Type -
Description -
Location Contig12340: 47376-58671
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02080g
description POPTRDRAFT_654478; Gamma-secretase subunit APH1-like family protein
nr
ID XP_002309813.1
description Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
swissprot
ID Q8L9G7
description Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2
trembl
ID B9HH67
description Gamma-secretase subunit APH1-like family protein OS=Populus trichocarpa GN=POPTR_0007s02080g PE=4 SV=1
Gene Ontology
ID GO:0016021
description gamma-secretase subunit aph1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07132: 47361-58669 , PASA_asmbl_07133: 48062-48178
cDNA
(Sanger)
(ID:Location)		 034_K16.ab1: 47799-58669

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012340_070 0.0 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
2 Hb_000004_020 0.0750756201 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000022_020 0.0852568837 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
4 Hb_000056_130 0.0940412811 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
5 Hb_001677_080 0.0977325391 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
6 Hb_001862_140 0.0990167845 - - natural resistance-associated macrophage protein, putative [Ricinus communis]
7 Hb_002391_290 0.1011197667 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
8 Hb_001662_100 0.1055271904 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
9 Hb_002226_080 0.1070021167 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
10 Hb_005463_110 0.1071986599 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
11 Hb_004157_100 0.1077203406 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
12 Hb_002150_040 0.1093796884 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
13 Hb_009569_040 0.1098133322 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
14 Hb_001898_210 0.1110645475 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
15 Hb_001014_110 0.1111361738 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
16 Hb_000110_190 0.112423568 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
17 Hb_000238_030 0.1171761055 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_002414_050 0.1174114856 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
19 Hb_008406_180 0.1174806267 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
20 Hb_005725_130 0.1174917219 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012340_070 Hb_012340_070 Hb_000004_020 Hb_000004_020 Hb_012340_070--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_012340_070--Hb_000022_020 Hb_000056_130 Hb_000056_130 Hb_012340_070--Hb_000056_130 Hb_001677_080 Hb_001677_080 Hb_012340_070--Hb_001677_080 Hb_001862_140 Hb_001862_140 Hb_012340_070--Hb_001862_140 Hb_002391_290 Hb_002391_290 Hb_012340_070--Hb_002391_290 Hb_002226_080 Hb_002226_080 Hb_000004_020--Hb_002226_080 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000004_020--Hb_000056_130 Hb_009569_040 Hb_009569_040 Hb_000004_020--Hb_009569_040 Hb_004157_100 Hb_004157_100 Hb_000004_020--Hb_004157_100 Hb_002414_050 Hb_002414_050 Hb_000022_020--Hb_002414_050 Hb_000830_030 Hb_000830_030 Hb_000022_020--Hb_000830_030 Hb_000170_090 Hb_000170_090 Hb_000022_020--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000022_020--Hb_004452_110 Hb_000022_020--Hb_001662_100 Hb_000345_160 Hb_000345_160 Hb_000022_020--Hb_000345_160 Hb_000056_130--Hb_002226_080 Hb_008511_020 Hb_008511_020 Hb_000056_130--Hb_008511_020 Hb_000056_130--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_000056_130--Hb_002928_090 Hb_001157_230 Hb_001157_230 Hb_000056_130--Hb_001157_230 Hb_006810_030 Hb_006810_030 Hb_000056_130--Hb_006810_030 Hb_001677_080--Hb_001862_140 Hb_001677_080--Hb_002391_290 Hb_001492_020 Hb_001492_020 Hb_001677_080--Hb_001492_020 Hb_002828_020 Hb_002828_020 Hb_001677_080--Hb_002828_020 Hb_002235_170 Hb_002235_170 Hb_001677_080--Hb_002235_170 Hb_001862_140--Hb_002391_290 Hb_000110_190 Hb_000110_190 Hb_001862_140--Hb_000110_190 Hb_000004_030 Hb_000004_030 Hb_001862_140--Hb_000004_030 Hb_000990_090 Hb_000990_090 Hb_001862_140--Hb_000990_090 Hb_002391_290--Hb_000990_090 Hb_002391_290--Hb_000004_030 Hb_002391_290--Hb_000110_190 Hb_000345_360 Hb_000345_360 Hb_002391_290--Hb_000345_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4551 8.97936 12.8396 37.2894 14.3649 28.4436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9528 8.19282 9.87772 22.4209 26.2772

CAGE analysis