Hb_000990_090

Information

Type -
Description -
Location Contig990: 164447-183090
Sequence    

Annotation

kegg
ID rcu:RCOM_0802660
description catalytic, putative
nr
ID XP_012077428.1
description PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
swissprot
ID Q5ZL00
description ER membrane protein complex subunit 1 OS=Gallus gallus GN=EMC1 PE=2 SV=1
trembl
ID A0A067KGU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07769 PE=4 SV=1
Gene Ontology
ID GO:0005774
description er membrane protein complex subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64766: 162222-183057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000990_090 0.0 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
2 Hb_000345_360 0.0507834266 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
3 Hb_002391_290 0.0666452886 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
4 Hb_009529_030 0.0783009281 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
5 Hb_000785_040 0.0812812518 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
6 Hb_004875_030 0.0815444655 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
7 Hb_004545_090 0.0836310298 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003010_020 0.085295206 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_086287_010 0.0861108239 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
10 Hb_000062_020 0.0863446078 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_001860_040 0.0864948154 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
12 Hb_012053_080 0.0876908735 - - AP-2 complex subunit alpha, putative [Ricinus communis]
13 Hb_002273_120 0.0883055484 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
14 Hb_001948_130 0.0893768873 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
15 Hb_004659_020 0.0898969324 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
16 Hb_000362_150 0.0905714421 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
17 Hb_002785_050 0.0909999723 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
18 Hb_004223_290 0.0910041476 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
19 Hb_025477_040 0.0911127466 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
20 Hb_004935_030 0.0914785505 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]

Gene co-expression network

sample Hb_000990_090 Hb_000990_090 Hb_000345_360 Hb_000345_360 Hb_000990_090--Hb_000345_360 Hb_002391_290 Hb_002391_290 Hb_000990_090--Hb_002391_290 Hb_009529_030 Hb_009529_030 Hb_000990_090--Hb_009529_030 Hb_000785_040 Hb_000785_040 Hb_000990_090--Hb_000785_040 Hb_004875_030 Hb_004875_030 Hb_000990_090--Hb_004875_030 Hb_004545_090 Hb_004545_090 Hb_000990_090--Hb_004545_090 Hb_000345_360--Hb_004875_030 Hb_004223_290 Hb_004223_290 Hb_000345_360--Hb_004223_290 Hb_000345_360--Hb_009529_030 Hb_000345_360--Hb_002391_290 Hb_041828_010 Hb_041828_010 Hb_000345_360--Hb_041828_010 Hb_001862_140 Hb_001862_140 Hb_002391_290--Hb_001862_140 Hb_000004_030 Hb_000004_030 Hb_002391_290--Hb_000004_030 Hb_000110_190 Hb_000110_190 Hb_002391_290--Hb_000110_190 Hb_001677_080 Hb_001677_080 Hb_002391_290--Hb_001677_080 Hb_002273_120 Hb_002273_120 Hb_009529_030--Hb_002273_120 Hb_017295_010 Hb_017295_010 Hb_009529_030--Hb_017295_010 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_002785_050 Hb_002785_050 Hb_009529_030--Hb_002785_050 Hb_032050_040 Hb_032050_040 Hb_009529_030--Hb_032050_040 Hb_007062_020 Hb_007062_020 Hb_000785_040--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_000785_040--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_000785_040--Hb_003966_030 Hb_027380_140 Hb_027380_140 Hb_000785_040--Hb_027380_140 Hb_001025_080 Hb_001025_080 Hb_000785_040--Hb_001025_080 Hb_001473_090 Hb_001473_090 Hb_000785_040--Hb_001473_090 Hb_004875_030--Hb_004223_290 Hb_002044_050 Hb_002044_050 Hb_004875_030--Hb_002044_050 Hb_001486_070 Hb_001486_070 Hb_004875_030--Hb_001486_070 Hb_004875_030--Hb_009529_030 Hb_100215_010 Hb_100215_010 Hb_004545_090--Hb_100215_010 Hb_003010_020 Hb_003010_020 Hb_004545_090--Hb_003010_020 Hb_000023_190 Hb_000023_190 Hb_004545_090--Hb_000023_190 Hb_011918_040 Hb_011918_040 Hb_004545_090--Hb_011918_040 Hb_002909_090 Hb_002909_090 Hb_004545_090--Hb_002909_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8875 18.0026 13.1808 28.1417 23.9704 35.086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3078 8.24824 11.7072 24.4873 18.6239

CAGE analysis