Hb_004545_090

Information

Type -
Description -
Location Contig4545: 135036-138190
Sequence    

Annotation

kegg
ID rcu:RCOM_1429700
description hypothetical protein
nr
ID XP_002512303.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID B9REY4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1429700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43388: 135112-138194
cDNA
(Sanger)
(ID:Location)		 018_E06.ab1: 135112-136571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_100215_010 0.0810881359 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
3 Hb_003010_020 0.0818699176 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000990_090 0.0836310298 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
5 Hb_000023_190 0.0839679972 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
6 Hb_011918_040 0.0860629455 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
7 Hb_002909_090 0.0877983597 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
8 Hb_000008_290 0.0896191498 - - PREDICTED: protein SAND [Jatropha curcas]
9 Hb_000640_100 0.0912073132 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002078_100 0.0921266255 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
11 Hb_000785_040 0.0922650084 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
12 Hb_007441_130 0.0943624061 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_004935_030 0.0947283577 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
14 Hb_000983_150 0.09619833 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
15 Hb_011716_020 0.0965268071 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
16 Hb_000470_070 0.0971418788 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
17 Hb_002235_160 0.0981850409 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
18 Hb_029904_020 0.0984931905 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
19 Hb_003916_010 0.0998421819 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
20 Hb_000362_150 0.1001277228 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_004545_090 Hb_004545_090 Hb_100215_010 Hb_100215_010 Hb_004545_090--Hb_100215_010 Hb_003010_020 Hb_003010_020 Hb_004545_090--Hb_003010_020 Hb_000990_090 Hb_000990_090 Hb_004545_090--Hb_000990_090 Hb_000023_190 Hb_000023_190 Hb_004545_090--Hb_000023_190 Hb_011918_040 Hb_011918_040 Hb_004545_090--Hb_011918_040 Hb_002909_090 Hb_002909_090 Hb_004545_090--Hb_002909_090 Hb_000983_150 Hb_000983_150 Hb_100215_010--Hb_000983_150 Hb_000300_440 Hb_000300_440 Hb_100215_010--Hb_000300_440 Hb_004689_050 Hb_004689_050 Hb_100215_010--Hb_004689_050 Hb_003362_070 Hb_003362_070 Hb_100215_010--Hb_003362_070 Hb_100215_010--Hb_000023_190 Hb_000343_030 Hb_000343_030 Hb_100215_010--Hb_000343_030 Hb_001416_070 Hb_001416_070 Hb_003010_020--Hb_001416_070 Hb_032050_040 Hb_032050_040 Hb_003010_020--Hb_032050_040 Hb_002273_120 Hb_002273_120 Hb_003010_020--Hb_002273_120 Hb_003438_050 Hb_003438_050 Hb_003010_020--Hb_003438_050 Hb_012194_050 Hb_012194_050 Hb_003010_020--Hb_012194_050 Hb_006909_070 Hb_006909_070 Hb_003010_020--Hb_006909_070 Hb_000345_360 Hb_000345_360 Hb_000990_090--Hb_000345_360 Hb_002391_290 Hb_002391_290 Hb_000990_090--Hb_002391_290 Hb_009529_030 Hb_009529_030 Hb_000990_090--Hb_009529_030 Hb_000785_040 Hb_000785_040 Hb_000990_090--Hb_000785_040 Hb_004875_030 Hb_004875_030 Hb_000990_090--Hb_004875_030 Hb_003464_020 Hb_003464_020 Hb_000023_190--Hb_003464_020 Hb_000567_050 Hb_000567_050 Hb_000023_190--Hb_000567_050 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_010381_060 Hb_010381_060 Hb_000023_190--Hb_010381_060 Hb_001488_410 Hb_001488_410 Hb_000023_190--Hb_001488_410 Hb_021409_170 Hb_021409_170 Hb_000023_190--Hb_021409_170 Hb_011918_040--Hb_003010_020 Hb_011918_040--Hb_001416_070 Hb_000780_190 Hb_000780_190 Hb_011918_040--Hb_000780_190 Hb_029904_020 Hb_029904_020 Hb_011918_040--Hb_029904_020 Hb_041828_010 Hb_041828_010 Hb_011918_040--Hb_041828_010 Hb_000640_100 Hb_000640_100 Hb_002909_090--Hb_000640_100 Hb_000740_100 Hb_000740_100 Hb_002909_090--Hb_000740_100 Hb_002815_030 Hb_002815_030 Hb_002909_090--Hb_002815_030 Hb_001452_220 Hb_001452_220 Hb_002909_090--Hb_001452_220 Hb_003498_120 Hb_003498_120 Hb_002909_090--Hb_003498_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.3586 31.0831 27.9991 39.4959 40.937 81.7935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.298 17.9166 22.3718 56.3741 44.6017

CAGE analysis