Hb_001416_070

Information

Type -
Description -
Location Contig1416: 116075-124402
Sequence    

Annotation

kegg
ID rcu:RCOM_0853910
description oxidoreductase, putative
nr
ID XP_002517453.1
description oxidoreductase, putative [Ricinus communis]
swissprot
ID Q795R8
description Uncharacterized protein YtfP OS=Bacillus subtilis (strain 168) GN=ytfP PE=4 SV=2
trembl
ID B9RUK8
description Oxidoreductase, putative OS=Ricinus communis GN=RCOM_0853910 PE=4 SV=1
Gene Ontology
ID GO:0042744
description oxidoreductase, putative

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11183: 116035-119802 , PASA_asmbl_11184: 116035-118341 , PASA_asmbl_11185: 121302-121531 , PASA_asmbl_11186: 121329-121524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001416_070 0.0 - - oxidoreductase, putative [Ricinus communis]
2 Hb_003010_020 0.0587604388 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_012194_050 0.0706813135 - - Aspartyl aminopeptidase, putative [Ricinus communis]
4 Hb_011918_040 0.0844520978 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
5 Hb_006909_070 0.0914965719 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_032050_040 0.0936108726 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
7 Hb_000120_920 0.0954789179 - - poly(A) polymerase, putative [Ricinus communis]
8 Hb_001025_080 0.0963778832 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
9 Hb_002551_070 0.0965056757 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
10 Hb_004096_100 0.0987063538 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
11 Hb_007919_100 0.1000202734 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
12 Hb_004412_010 0.100902454 - - -
13 Hb_000785_040 0.1009780099 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
14 Hb_023278_010 0.1013638903 - - Chaperone protein DnaJ [Glycine soja]
15 Hb_165928_020 0.1036287562 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
16 Hb_003438_050 0.1039858079 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
17 Hb_000152_260 0.1044203245 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
18 Hb_000062_430 0.104691843 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
19 Hb_006445_010 0.1047682311 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
20 Hb_004963_030 0.104803869 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001416_070 Hb_001416_070 Hb_003010_020 Hb_003010_020 Hb_001416_070--Hb_003010_020 Hb_012194_050 Hb_012194_050 Hb_001416_070--Hb_012194_050 Hb_011918_040 Hb_011918_040 Hb_001416_070--Hb_011918_040 Hb_006909_070 Hb_006909_070 Hb_001416_070--Hb_006909_070 Hb_032050_040 Hb_032050_040 Hb_001416_070--Hb_032050_040 Hb_000120_920 Hb_000120_920 Hb_001416_070--Hb_000120_920 Hb_003010_020--Hb_032050_040 Hb_002273_120 Hb_002273_120 Hb_003010_020--Hb_002273_120 Hb_003438_050 Hb_003438_050 Hb_003010_020--Hb_003438_050 Hb_003010_020--Hb_012194_050 Hb_003010_020--Hb_006909_070 Hb_152202_010 Hb_152202_010 Hb_012194_050--Hb_152202_010 Hb_005078_010 Hb_005078_010 Hb_012194_050--Hb_005078_010 Hb_000362_150 Hb_000362_150 Hb_012194_050--Hb_000362_150 Hb_012194_050--Hb_032050_040 Hb_011918_040--Hb_003010_020 Hb_004545_090 Hb_004545_090 Hb_011918_040--Hb_004545_090 Hb_000780_190 Hb_000780_190 Hb_011918_040--Hb_000780_190 Hb_029904_020 Hb_029904_020 Hb_011918_040--Hb_029904_020 Hb_041828_010 Hb_041828_010 Hb_011918_040--Hb_041828_010 Hb_004097_070 Hb_004097_070 Hb_006909_070--Hb_004097_070 Hb_000107_210 Hb_000107_210 Hb_006909_070--Hb_000107_210 Hb_007943_110 Hb_007943_110 Hb_006909_070--Hb_007943_110 Hb_007919_100 Hb_007919_100 Hb_006909_070--Hb_007919_100 Hb_002947_030 Hb_002947_030 Hb_006909_070--Hb_002947_030 Hb_007441_130 Hb_007441_130 Hb_006909_070--Hb_007441_130 Hb_032050_040--Hb_007919_100 Hb_032050_040--Hb_152202_010 Hb_032050_040--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_032050_040--Hb_002785_050 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_165928_020 Hb_165928_020 Hb_000120_920--Hb_165928_020 Hb_023386_040 Hb_023386_040 Hb_000120_920--Hb_023386_040 Hb_000062_430 Hb_000062_430 Hb_000120_920--Hb_000062_430 Hb_004412_010 Hb_004412_010 Hb_000120_920--Hb_004412_010 Hb_000120_920--Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_000120_920--Hb_003025_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.08328 4.10519 4.36579 4.78552 6.87958 13.3438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.68064 4.20406 3.06532 5.32079 7.3837

CAGE analysis