Hb_005078_010

Information

Type -
Description -
Location Contig5078: 17730-24928
Sequence    

Annotation

kegg
ID rcu:RCOM_0905230
description Derlin-2, putative
nr
ID XP_002518504.1
description Derlin-2, putative [Ricinus communis]
swissprot
ID Q9ZS88
description Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1
trembl
ID B9RXN5
description Derlin-2, putative OS=Ricinus communis GN=RCOM_0905230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46181: 19294-19566 , PASA_asmbl_46183: 23608-23746
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005078_010 0.0 - - Derlin-2, putative [Ricinus communis]
2 Hb_012194_050 0.0798691409 - - Aspartyl aminopeptidase, putative [Ricinus communis]
3 Hb_152202_010 0.0889942289 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
4 Hb_004060_020 0.0968325298 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_004994_380 0.0975074722 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
6 Hb_000193_270 0.0989938858 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
7 Hb_000074_080 0.1085989032 - - unknown [Populus trichocarpa]
8 Hb_003010_020 0.1109824753 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_054745_010 0.1119208643 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000606_090 0.1119672767 - - Far upstream element-binding protein, putative [Ricinus communis]
11 Hb_001014_160 0.114313774 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
12 Hb_000120_920 0.1154260564 - - poly(A) polymerase, putative [Ricinus communis]
13 Hb_000362_150 0.1161434211 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
14 Hb_032050_040 0.116189034 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
15 Hb_172632_040 0.1183036964 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
16 Hb_001416_070 0.119543768 - - oxidoreductase, putative [Ricinus communis]
17 Hb_004531_140 0.1214060835 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
18 Hb_000830_030 0.1222684632 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
19 Hb_000521_120 0.1223093787 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000705_120 0.1230678816 - - glycosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005078_010 Hb_005078_010 Hb_012194_050 Hb_012194_050 Hb_005078_010--Hb_012194_050 Hb_152202_010 Hb_152202_010 Hb_005078_010--Hb_152202_010 Hb_004060_020 Hb_004060_020 Hb_005078_010--Hb_004060_020 Hb_004994_380 Hb_004994_380 Hb_005078_010--Hb_004994_380 Hb_000193_270 Hb_000193_270 Hb_005078_010--Hb_000193_270 Hb_000074_080 Hb_000074_080 Hb_005078_010--Hb_000074_080 Hb_012194_050--Hb_152202_010 Hb_001416_070 Hb_001416_070 Hb_012194_050--Hb_001416_070 Hb_003010_020 Hb_003010_020 Hb_012194_050--Hb_003010_020 Hb_000362_150 Hb_000362_150 Hb_012194_050--Hb_000362_150 Hb_032050_040 Hb_032050_040 Hb_012194_050--Hb_032050_040 Hb_007919_100 Hb_007919_100 Hb_152202_010--Hb_007919_100 Hb_152202_010--Hb_032050_040 Hb_152202_010--Hb_000362_150 Hb_001640_030 Hb_001640_030 Hb_152202_010--Hb_001640_030 Hb_001898_210 Hb_001898_210 Hb_152202_010--Hb_001898_210 Hb_001971_010 Hb_001971_010 Hb_004060_020--Hb_001971_010 Hb_001575_070 Hb_001575_070 Hb_004060_020--Hb_001575_070 Hb_163950_030 Hb_163950_030 Hb_004060_020--Hb_163950_030 Hb_002235_250 Hb_002235_250 Hb_004060_020--Hb_002235_250 Hb_009694_010 Hb_009694_010 Hb_004060_020--Hb_009694_010 Hb_010710_070 Hb_010710_070 Hb_004994_380--Hb_010710_070 Hb_000076_130 Hb_000076_130 Hb_004994_380--Hb_000076_130 Hb_001014_160 Hb_001014_160 Hb_004994_380--Hb_001014_160 Hb_188063_020 Hb_188063_020 Hb_004994_380--Hb_188063_020 Hb_001141_020 Hb_001141_020 Hb_004994_380--Hb_001141_020 Hb_004963_030 Hb_004963_030 Hb_004994_380--Hb_004963_030 Hb_000599_300 Hb_000599_300 Hb_000193_270--Hb_000599_300 Hb_153533_010 Hb_153533_010 Hb_000193_270--Hb_153533_010 Hb_009117_030 Hb_009117_030 Hb_000193_270--Hb_009117_030 Hb_003633_030 Hb_003633_030 Hb_000193_270--Hb_003633_030 Hb_011021_020 Hb_011021_020 Hb_000193_270--Hb_011021_020 Hb_001247_310 Hb_001247_310 Hb_000074_080--Hb_001247_310 Hb_001119_060 Hb_001119_060 Hb_000074_080--Hb_001119_060 Hb_000181_130 Hb_000181_130 Hb_000074_080--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_000074_080--Hb_009328_020 Hb_007192_070 Hb_007192_070 Hb_000074_080--Hb_007192_070 Hb_000915_260 Hb_000915_260 Hb_000074_080--Hb_000915_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74882 0.420896 0.93514 1.75047 1.32986 3.13881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32646 1.44727 1.06191 1.20099 2.08435

CAGE analysis