Hb_000074_080

Information

Type -
Description -
Location Contig74: 110886-113480
Sequence    

Annotation

kegg
ID pmum:103329097
description neuferricin
nr
ID ABK93240.1
description unknown [Populus trichocarpa]
swissprot
ID Q2HIW2
description Membrane-associated progesterone-binding protein 4 OS=Arabidopsis thaliana GN=MAPR4 PE=2 SV=1
trembl
ID A9PA37
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0006301
description membrane-associated progesterone-binding protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56350: 81851-113369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000074_080 0.0 - - unknown [Populus trichocarpa]
2 Hb_001247_310 0.0817928107 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
3 Hb_001119_060 0.0876537219 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
4 Hb_000181_130 0.089858131 - - ATP binding protein, putative [Ricinus communis]
5 Hb_009328_020 0.0921296758 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007192_070 0.0957956364 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
7 Hb_000915_260 0.0995812647 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
8 Hb_001188_070 0.1000860351 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
9 Hb_172632_040 0.100686747 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
10 Hb_009898_050 0.1008411199 - - PREDICTED: beta-taxilin [Jatropha curcas]
11 Hb_000479_250 0.1014122287 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
12 Hb_001135_220 0.1014549622 - - FGFR1 oncogene partner, putative [Ricinus communis]
13 Hb_109000_020 0.1023679976 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
14 Hb_004330_090 0.1030365193 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_000046_330 0.104831285 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
16 Hb_003440_060 0.1059147476 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
17 Hb_001014_160 0.1060303866 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
18 Hb_041290_020 0.1070262031 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
19 Hb_005098_010 0.1081332416 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
20 Hb_005078_010 0.1085989032 - - Derlin-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000074_080 Hb_000074_080 Hb_001247_310 Hb_001247_310 Hb_000074_080--Hb_001247_310 Hb_001119_060 Hb_001119_060 Hb_000074_080--Hb_001119_060 Hb_000181_130 Hb_000181_130 Hb_000074_080--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_000074_080--Hb_009328_020 Hb_007192_070 Hb_007192_070 Hb_000074_080--Hb_007192_070 Hb_000915_260 Hb_000915_260 Hb_000074_080--Hb_000915_260 Hb_000111_320 Hb_000111_320 Hb_001247_310--Hb_000111_320 Hb_000466_140 Hb_000466_140 Hb_001247_310--Hb_000466_140 Hb_001247_310--Hb_001119_060 Hb_000075_040 Hb_000075_040 Hb_001247_310--Hb_000075_040 Hb_000392_430 Hb_000392_430 Hb_001247_310--Hb_000392_430 Hb_004319_080 Hb_004319_080 Hb_001247_310--Hb_004319_080 Hb_001119_060--Hb_000466_140 Hb_001119_060--Hb_000111_320 Hb_002965_090 Hb_002965_090 Hb_001119_060--Hb_002965_090 Hb_001119_060--Hb_000392_430 Hb_000181_130--Hb_009328_020 Hb_000594_050 Hb_000594_050 Hb_000181_130--Hb_000594_050 Hb_000621_010 Hb_000621_010 Hb_000181_130--Hb_000621_010 Hb_054865_150 Hb_054865_150 Hb_000181_130--Hb_054865_150 Hb_065500_060 Hb_065500_060 Hb_000181_130--Hb_065500_060 Hb_008847_030 Hb_008847_030 Hb_000181_130--Hb_008847_030 Hb_000479_250 Hb_000479_250 Hb_009328_020--Hb_000479_250 Hb_109000_020 Hb_109000_020 Hb_009328_020--Hb_109000_020 Hb_002289_080 Hb_002289_080 Hb_009328_020--Hb_002289_080 Hb_001898_210 Hb_001898_210 Hb_009328_020--Hb_001898_210 Hb_009898_050 Hb_009898_050 Hb_009328_020--Hb_009898_050 Hb_000172_580 Hb_000172_580 Hb_007192_070--Hb_000172_580 Hb_017987_030 Hb_017987_030 Hb_007192_070--Hb_017987_030 Hb_004330_090 Hb_004330_090 Hb_007192_070--Hb_004330_090 Hb_003376_230 Hb_003376_230 Hb_007192_070--Hb_003376_230 Hb_002553_060 Hb_002553_060 Hb_007192_070--Hb_002553_060 Hb_000915_260--Hb_009898_050 Hb_002276_170 Hb_002276_170 Hb_000915_260--Hb_002276_170 Hb_001141_020 Hb_001141_020 Hb_000915_260--Hb_001141_020 Hb_168978_030 Hb_168978_030 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_001205_120 Hb_001205_120 Hb_000915_260--Hb_001205_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.54396 2.97247 10.6597 13.1849 14.3367 16.3393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.51209 13.1583 7.19223 11.6489 16.9684

CAGE analysis