Hb_001119_060

Information

Type -
Description -
Location Contig1119: 124237-135858
Sequence    

Annotation

kegg
ID mdm:103456316
description histone-lysine N-methyltransferase ASHH3
nr
ID XP_008394243.1
description PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
swissprot
ID Q945S8
description Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2
trembl
ID U5FGB0
description Histone-lysine N-methyltransferase OS=Populus trichocarpa GN=POPTR_0017s00510g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03598: 124014-127324 , PASA_asmbl_03602: 128982-129420 , PASA_asmbl_03603: 133042-135440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001119_060 0.0 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
2 Hb_001247_310 0.0669468692 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
3 Hb_000074_080 0.0876537219 - - unknown [Populus trichocarpa]
4 Hb_000466_140 0.1023065655 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
5 Hb_000111_320 0.1035095242 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
6 Hb_002965_090 0.108982574 - - importin alpha, putative [Ricinus communis]
7 Hb_000392_430 0.1105477011 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
8 Hb_001348_020 0.115383859 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
9 Hb_001314_050 0.1187469848 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
10 Hb_007390_010 0.1199884197 - - catalytic, putative [Ricinus communis]
11 Hb_002811_180 0.121286897 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000640_170 0.1214766432 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
13 Hb_109000_020 0.1220878172 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
14 Hb_002205_210 0.1230882561 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
15 Hb_162603_010 0.1239098559 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_002811_030 0.124896086 - - PREDICTED: cysteine synthase [Jatropha curcas]
17 Hb_004319_080 0.1252165381 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
18 Hb_001301_100 0.1252595513 - - transporter, putative [Ricinus communis]
19 Hb_000270_290 0.1260661332 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
20 Hb_001014_110 0.1262603521 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]

Gene co-expression network

sample Hb_001119_060 Hb_001119_060 Hb_001247_310 Hb_001247_310 Hb_001119_060--Hb_001247_310 Hb_000074_080 Hb_000074_080 Hb_001119_060--Hb_000074_080 Hb_000466_140 Hb_000466_140 Hb_001119_060--Hb_000466_140 Hb_000111_320 Hb_000111_320 Hb_001119_060--Hb_000111_320 Hb_002965_090 Hb_002965_090 Hb_001119_060--Hb_002965_090 Hb_000392_430 Hb_000392_430 Hb_001119_060--Hb_000392_430 Hb_001247_310--Hb_000111_320 Hb_001247_310--Hb_000466_140 Hb_000075_040 Hb_000075_040 Hb_001247_310--Hb_000075_040 Hb_001247_310--Hb_000392_430 Hb_004319_080 Hb_004319_080 Hb_001247_310--Hb_004319_080 Hb_000074_080--Hb_001247_310 Hb_000181_130 Hb_000181_130 Hb_000074_080--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_000074_080--Hb_009328_020 Hb_007192_070 Hb_007192_070 Hb_000074_080--Hb_007192_070 Hb_000915_260 Hb_000915_260 Hb_000074_080--Hb_000915_260 Hb_000466_140--Hb_000111_320 Hb_000466_140--Hb_000392_430 Hb_000749_190 Hb_000749_190 Hb_000466_140--Hb_000749_190 Hb_002811_180 Hb_002811_180 Hb_000466_140--Hb_002811_180 Hb_003847_130 Hb_003847_130 Hb_000466_140--Hb_003847_130 Hb_000111_320--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_000111_320--Hb_001314_050 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100 Hb_000111_320--Hb_002811_180 Hb_001571_050 Hb_001571_050 Hb_002965_090--Hb_001571_050 Hb_056691_060 Hb_056691_060 Hb_002965_090--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_002965_090--Hb_000053_040 Hb_002965_090--Hb_001247_310 Hb_007380_060 Hb_007380_060 Hb_002965_090--Hb_007380_060 Hb_000254_090 Hb_000254_090 Hb_002965_090--Hb_000254_090 Hb_000392_430--Hb_001314_050 Hb_001671_100 Hb_001671_100 Hb_000392_430--Hb_001671_100 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.422394 0.148128 0.383721 0.678558 0.560168 0.836251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.488945 0.769379 0.282295 0.885819 0.763695

CAGE analysis