Hb_003847_130

Information

Type -
Description -
Location Contig3847: 136042-140234
Sequence    

Annotation

kegg
ID rcu:RCOM_1312700
description cytochrome C oxidase assembly protein cox11, putative
nr
ID XP_002518877.1
description cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
swissprot
ID Q2TBP8
description Methyltransferase-like protein 17, mitochondrial OS=Bos taurus GN=METTL17 PE=2 SV=1
trembl
ID B9RYQ8
description Cytochrome C oxidase assembly protein cox11, putative OS=Ricinus communis GN=RCOM_1312700 PE=4 SV=1
Gene Ontology
ID GO:0005507
description methyltransferase-like protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38730: 136067-139877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_130 0.0 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
2 Hb_007632_240 0.0589275164 - - transporter, putative [Ricinus communis]
3 Hb_001442_040 0.0598458097 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
4 Hb_007645_100 0.0639230109 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
5 Hb_000466_140 0.0715434165 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
6 Hb_002592_060 0.0721156163 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004410_030 0.0723326679 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_004963_030 0.0723614823 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_003375_070 0.0733474205 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
10 Hb_001021_150 0.0735916167 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
11 Hb_000165_040 0.0739476092 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
12 Hb_001301_100 0.0739706194 - - transporter, putative [Ricinus communis]
13 Hb_004254_090 0.0746245931 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
14 Hb_001014_160 0.0752935704 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
15 Hb_002154_100 0.0778288299 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
16 Hb_000617_180 0.078041834 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_033642_090 0.0782541055 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000032_280 0.0789538984 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
19 Hb_012733_030 0.0790766811 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
20 Hb_006198_120 0.0792084723 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]

Gene co-expression network

sample Hb_003847_130 Hb_003847_130 Hb_007632_240 Hb_007632_240 Hb_003847_130--Hb_007632_240 Hb_001442_040 Hb_001442_040 Hb_003847_130--Hb_001442_040 Hb_007645_100 Hb_007645_100 Hb_003847_130--Hb_007645_100 Hb_000466_140 Hb_000466_140 Hb_003847_130--Hb_000466_140 Hb_002592_060 Hb_002592_060 Hb_003847_130--Hb_002592_060 Hb_004410_030 Hb_004410_030 Hb_003847_130--Hb_004410_030 Hb_000638_120 Hb_000638_120 Hb_007632_240--Hb_000638_120 Hb_003438_050 Hb_003438_050 Hb_007632_240--Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_007632_240--Hb_003025_110 Hb_003375_070 Hb_003375_070 Hb_007632_240--Hb_003375_070 Hb_007632_240--Hb_004410_030 Hb_004963_030 Hb_004963_030 Hb_001442_040--Hb_004963_030 Hb_012733_030 Hb_012733_030 Hb_001442_040--Hb_012733_030 Hb_001442_040--Hb_002592_060 Hb_001301_100 Hb_001301_100 Hb_001442_040--Hb_001301_100 Hb_001014_160 Hb_001014_160 Hb_001442_040--Hb_001014_160 Hb_000731_270 Hb_000731_270 Hb_007645_100--Hb_000731_270 Hb_002217_250 Hb_002217_250 Hb_007645_100--Hb_002217_250 Hb_002263_020 Hb_002263_020 Hb_007645_100--Hb_002263_020 Hb_005054_090 Hb_005054_090 Hb_007645_100--Hb_005054_090 Hb_000347_070 Hb_000347_070 Hb_007645_100--Hb_000347_070 Hb_000111_320 Hb_000111_320 Hb_000466_140--Hb_000111_320 Hb_001247_310 Hb_001247_310 Hb_000466_140--Hb_001247_310 Hb_000392_430 Hb_000392_430 Hb_000466_140--Hb_000392_430 Hb_000749_190 Hb_000749_190 Hb_000466_140--Hb_000749_190 Hb_002811_180 Hb_002811_180 Hb_000466_140--Hb_002811_180 Hb_001021_150 Hb_001021_150 Hb_002592_060--Hb_001021_150 Hb_004846_220 Hb_004846_220 Hb_002592_060--Hb_004846_220 Hb_002592_060--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_002592_060--Hb_004254_090 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_006483_110 Hb_006483_110 Hb_002592_060--Hb_006483_110 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_000011_200 Hb_000011_200 Hb_004410_030--Hb_000011_200 Hb_004410_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5145 8.97894 9.60152 9.18956 16.518 15.4703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.532 13.3132 9.16992 17.417 16.4391

CAGE analysis