Hb_005054_090

Information

Type -
Description -
Location Contig5054: 71222-75325
Sequence    

Annotation

kegg
ID rcu:RCOM_0498410
description hypothetical protein
nr
ID XP_012088040.1
description PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
swissprot
ID Q8GXP4
description Uncharacterized protein At2g39910 OS=Arabidopsis thaliana GN=At2g39910 PE=2 SV=2
trembl
ID A0A067L8W3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01337 PE=4 SV=1
Gene Ontology
ID GO:0004553
description arm repeat superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46059: 71232-71459 , PASA_asmbl_46060: 71788-74861 , PASA_asmbl_46061: 75223-75442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_090 0.0 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
2 Hb_000792_010 0.0662097506 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
3 Hb_007645_100 0.0702750643 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
4 Hb_003029_110 0.0716007807 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
5 Hb_000621_010 0.0761074484 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
6 Hb_000029_300 0.0765105024 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
7 Hb_000032_520 0.0769070815 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
8 Hb_000665_100 0.0786923258 - - PREDICTED: neurochondrin [Jatropha curcas]
9 Hb_000340_530 0.0792555414 - - hypothetical protein VITISV_016664 [Vitis vinifera]
10 Hb_000749_190 0.0792660112 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
11 Hb_000166_130 0.0800924044 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005730_090 0.0815126333 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]
13 Hb_004567_090 0.0831775495 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
14 Hb_009545_100 0.0834860634 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
15 Hb_000003_590 0.0841050382 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
16 Hb_007943_110 0.0853731048 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
17 Hb_000025_640 0.0854563684 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
18 Hb_002374_370 0.0861319193 - - protein with unknown function [Ricinus communis]
19 Hb_000343_120 0.0867781806 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
20 Hb_002263_020 0.0873076742 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_005054_090 Hb_005054_090 Hb_000792_010 Hb_000792_010 Hb_005054_090--Hb_000792_010 Hb_007645_100 Hb_007645_100 Hb_005054_090--Hb_007645_100 Hb_003029_110 Hb_003029_110 Hb_005054_090--Hb_003029_110 Hb_000621_010 Hb_000621_010 Hb_005054_090--Hb_000621_010 Hb_000029_300 Hb_000029_300 Hb_005054_090--Hb_000029_300 Hb_000032_520 Hb_000032_520 Hb_005054_090--Hb_000032_520 Hb_000329_710 Hb_000329_710 Hb_000792_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_000792_010--Hb_002518_260 Hb_000028_480 Hb_000028_480 Hb_000792_010--Hb_000028_480 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_011386_010 Hb_011386_010 Hb_000792_010--Hb_011386_010 Hb_000731_270 Hb_000731_270 Hb_007645_100--Hb_000731_270 Hb_002217_250 Hb_002217_250 Hb_007645_100--Hb_002217_250 Hb_002263_020 Hb_002263_020 Hb_007645_100--Hb_002263_020 Hb_003847_130 Hb_003847_130 Hb_007645_100--Hb_003847_130 Hb_000347_070 Hb_000347_070 Hb_007645_100--Hb_000347_070 Hb_000166_130 Hb_000166_130 Hb_003029_110--Hb_000166_130 Hb_001195_320 Hb_001195_320 Hb_003029_110--Hb_001195_320 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_000343_120 Hb_000343_120 Hb_003029_110--Hb_000343_120 Hb_010222_050 Hb_010222_050 Hb_003029_110--Hb_010222_050 Hb_003371_110 Hb_003371_110 Hb_003029_110--Hb_003371_110 Hb_008847_030 Hb_008847_030 Hb_000621_010--Hb_008847_030 Hb_002811_180 Hb_002811_180 Hb_000621_010--Hb_002811_180 Hb_000181_130 Hb_000181_130 Hb_000621_010--Hb_000181_130 Hb_003938_090 Hb_003938_090 Hb_000621_010--Hb_003938_090 Hb_005504_060 Hb_005504_060 Hb_000621_010--Hb_005504_060 Hb_000060_090 Hb_000060_090 Hb_000029_300--Hb_000060_090 Hb_000923_010 Hb_000923_010 Hb_000029_300--Hb_000923_010 Hb_000213_010 Hb_000213_010 Hb_000029_300--Hb_000213_010 Hb_014361_070 Hb_014361_070 Hb_000029_300--Hb_014361_070 Hb_000340_530 Hb_000340_530 Hb_000029_300--Hb_000340_530 Hb_007576_110 Hb_007576_110 Hb_000029_300--Hb_007576_110 Hb_015934_040 Hb_015934_040 Hb_000032_520--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000032_520--Hb_001538_130 Hb_000003_590 Hb_000003_590 Hb_000032_520--Hb_000003_590 Hb_000032_520--Hb_000792_010 Hb_019863_070 Hb_019863_070 Hb_000032_520--Hb_019863_070 Hb_010618_010 Hb_010618_010 Hb_000032_520--Hb_010618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.33757 6.13406 3.71265 5.17571 7.84597 7.52443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.18471 6.46236 5.22134 5.89523 7.49728

CAGE analysis