Hb_000466_140

Information

Type -
Description -
Location Contig466: 334844-337922
Sequence    

Annotation

kegg
ID rcu:RCOM_0913540
description short-chain dehydrogenase, putative (EC:1.1.1.102)
nr
ID KDP40124.1
description hypothetical protein JCGZ_02122 [Jatropha curcas]
swissprot
ID Q0WRJ2
description 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis thaliana GN=TSC10A PE=1 SV=1
trembl
ID A0A067L7Q6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02122 PE=4 SV=1
Gene Ontology
ID GO:0016491
description 3-ketodihydrosphingosine reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44087: 334996-337841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000466_140 0.0 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
2 Hb_000111_320 0.045761055 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
3 Hb_001247_310 0.0656390357 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
4 Hb_000392_430 0.0684493074 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
5 Hb_000749_190 0.0694106776 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
6 Hb_002811_180 0.0701652499 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003847_130 0.0715434165 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
8 Hb_000441_200 0.0728366554 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
9 Hb_000138_100 0.0748929559 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
10 Hb_056691_060 0.0787613489 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
11 Hb_000254_090 0.0790568763 - - PREDICTED: la protein 2 [Jatropha curcas]
12 Hb_003375_070 0.0791136546 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
13 Hb_000345_240 0.0800646522 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
14 Hb_000053_040 0.0802151638 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
15 Hb_168978_030 0.0804650935 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
16 Hb_000872_010 0.0814272283 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
17 Hb_000035_470 0.0818561795 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
18 Hb_004567_090 0.0823543202 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
19 Hb_000613_050 0.083743004 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
20 Hb_000640_170 0.0837664882 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000466_140 Hb_000466_140 Hb_000111_320 Hb_000111_320 Hb_000466_140--Hb_000111_320 Hb_001247_310 Hb_001247_310 Hb_000466_140--Hb_001247_310 Hb_000392_430 Hb_000392_430 Hb_000466_140--Hb_000392_430 Hb_000749_190 Hb_000749_190 Hb_000466_140--Hb_000749_190 Hb_002811_180 Hb_002811_180 Hb_000466_140--Hb_002811_180 Hb_003847_130 Hb_003847_130 Hb_000466_140--Hb_003847_130 Hb_000111_320--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_000111_320--Hb_001314_050 Hb_000111_320--Hb_001247_310 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100 Hb_000111_320--Hb_002811_180 Hb_001119_060 Hb_001119_060 Hb_001247_310--Hb_001119_060 Hb_000075_040 Hb_000075_040 Hb_001247_310--Hb_000075_040 Hb_001247_310--Hb_000392_430 Hb_004319_080 Hb_004319_080 Hb_001247_310--Hb_004319_080 Hb_000392_430--Hb_001314_050 Hb_001671_100 Hb_001671_100 Hb_000392_430--Hb_001671_100 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000749_190--Hb_001671_100 Hb_000749_190--Hb_000392_430 Hb_004567_090 Hb_004567_090 Hb_000749_190--Hb_004567_090 Hb_000749_190--Hb_001314_050 Hb_000749_190--Hb_000111_320 Hb_003750_050 Hb_003750_050 Hb_002811_180--Hb_003750_050 Hb_000260_330 Hb_000260_330 Hb_002811_180--Hb_000260_330 Hb_000621_010 Hb_000621_010 Hb_002811_180--Hb_000621_010 Hb_008847_030 Hb_008847_030 Hb_002811_180--Hb_008847_030 Hb_007632_240 Hb_007632_240 Hb_003847_130--Hb_007632_240 Hb_001442_040 Hb_001442_040 Hb_003847_130--Hb_001442_040 Hb_007645_100 Hb_007645_100 Hb_003847_130--Hb_007645_100 Hb_002592_060 Hb_002592_060 Hb_003847_130--Hb_002592_060 Hb_004410_030 Hb_004410_030 Hb_003847_130--Hb_004410_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.75082 6.514 7.51043 12.4986 13.7642 13.2651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9575 11.5975 8.35491 16.7803 12.1767

CAGE analysis